Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq175891 118 8e-22 seq5262 96.9 3e-15 >seq175891 Length=10111 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | || || || |||||||| | ||| ||||||||||||||||||||||| Sbjct 8545 GCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGA 8486 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || |||| ||||| || || || ||||| |||| || |||||||| | ||| Sbjct 8485 CAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGG 8426 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| ||| || ||||||| | | || || || | ||| || Sbjct 8425 GATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAAC 8366 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || ||||| || ||||| || || ||||| || ||||| Sbjct 8365 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || || ||||| || || |||||||| | | || Sbjct 9219 AGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGT 9160 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||||||||| || |||| || ||||| || | ||||| || ||| Sbjct 9159 CCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCC 9100 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || |||||| | | || || || | ||| || |||| || Sbjct 9099 TTATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTG 9040 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||| ||||| ||||| || ||||| Sbjct 9039 ATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||||||||| |||||||| || | | | || |||| ||| Sbjct 8298 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCC 8239 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || ||||||||||| |||| || |||||||| | ||||| |||||||| || Sbjct 8238 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATC 8183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || |||||||| || | | || | || ||||| || ||||| || || Sbjct 8736 TCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAG 8677 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | ||||||||||| | ||||| || || ||||| || || ||| || Sbjct 8676 ATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTT 8617 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || ||||| | ||||| ||||||||||| || ||||| || Sbjct 8616 TCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACG 8557 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 8556 AAAATTTGCAT 8546 >seq5262 Length=11329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || | || || |||||||||||||| ||||| ||| | ||| Sbjct 3161 AGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGA 3220 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| || | || || ||||| | |||| ||||| Sbjct 3221 CCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCT 3280 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | | || || | || ||||| | || Sbjct 3281 TTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTG 3340 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||||| ||||| |||||||| Sbjct 3341 ATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380044070384580