Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq175891 118 9e-22 seq188148 113 4e-20 seq5262 91.5 1e-13 >seq175891 Length=10111 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| |||||||| ||||| ||||| || |||||||| Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || |||||| |||||||| || | ||| ||||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| | | ||||| || || ||||||||||||||| || || ||||||| ||| Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||||||||||||| || ||| | |||||| | | || ||||| || Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGGTAT 8775 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || ||||| || || || || ||| ||| || || || Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| |||||| |||||||| || | ||| ||||||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| || ||||||||||||||| || || | || || ||| Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || |||||||||||||| || ||| | |||||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8986 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| || || || || ||||| || || ||||| ||| || |||||| Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 || || || | | | ||||| ||||| || || ||||| | ||| |||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| | | || ||||| || |||||||||||||| ||| || ||||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||||||||||||||| || || |||| Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGT 8298 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || |||||||| || || || ||||| Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || || |||| || ||||| || ||| | ||| |||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAA-GACAAGGAAGGAATCCCCCCAGATCA 8436 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || ||||| ||||||||||||||||| || || | ||||| || Sbjct 8437 ACAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAA 8496 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || |||| |||||||| | ||||| || || || Sbjct 8497 TATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGGCAT 8547 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || || || || || || || ||| || || || Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||||| || ||||| || | || ||||||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | || || || || |||||||||||||| ||| || ||||||||||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 || ||||| || ||||| || ||| |||| || Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTT 9669 >seq188148 Length=18106 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| ||||| ||||||||||||||| ||| || ||||| Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| |||||| |||||||| || | ||| ||||||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | ||||| || || ||||||||||||||| | || || |||| || ||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 || ||||| ||||| ||| | || ||||| Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGTA 3630 >seq5262 Length=11329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| |||||||| ||||| |||||||||| ||||| || || |||||||| Sbjct 3379 AATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTC 3320 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || || | || |||||||||||| | || ||||| Sbjct 3319 TGATACCATTGAAAATGTTAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCAGATC 3261 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || | | || ||||| || ||||| ||||||||| | ||| | | || || | Sbjct 3260 AGCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACA 3201 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 | |||||||| ||||| || ||||| |||| || Sbjct 3200 ATATTCAAAAGGAATCGACATTGCACTTGGTTTT 3167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424406967842340