Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq31717 104 3e-17 seq172082 102 1e-16 seq123671 93.3 5e-14 seq172236 82.4 9e-11 >seq31717 Length=19532 Score = 104 bits (114), Expect = 3e-17 Identities = 288/442 (65%), Gaps = 0/442 (0%) Strand=Plus/Minus Query 14342 CGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCT 14401 || ||||| || ||||| ||||||| | |||||| || | || || |||| | Sbjct 7217 CGTTCTATACCCTGTATGGTGGATGGTTTTAAGCCTGGTCAACGTAAGGTTATGTTCACC 7158 Query 14402 TGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCG 14461 || ||| | ||| ||| |||| | ||||| || ||| || | | | ||| || Sbjct 7157 TGTTTCAAACGTAATGACAAACGTGAAGTCAAGGTTGCTCAATTGTCCGGTTCTGTTGCT 7098 Query 14462 GACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCA 14521 || | |||||| ||||| ||||||||||| || || || |||||||| || || Sbjct 7097 GAAATGTCTGCCTACCATCATGGTGAAGTCTCTCTACAAATGACTATTGTTAATTTAGCT 7038 Query 14522 AACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACG 14581 | | || |||||| || ||||| || | || || || | |||||||| ||||| Sbjct 7037 CAAAATTATGTGGGTTCTAATAACATCAATTTGCTAGAGCCTAGAGGTCAATTCGGTACT 6978 Query 14582 CGTCTCATGGGTGGTAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAG 14641 ||| | | |||||| || ||| || | | || |||||||| | | | Sbjct 6977 CGTTTAACGGGTGGCAAAGATTGCGCTAGCGCTCGTTATATTTTCACCATTATGTCTCCC 6918 Query 14642 GAGGCTCGCAAGATCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGAT 14701 |||||| ||| || |||| | ||||| || | ||| | ||| | ||||||| Sbjct 6917 TTGGCTCGTTTGATATTCCATCCCCATGATGATCCTTTACTCCAGTACGAAGTCGATGAT 6858 Query 14702 GGACGCTCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGA 14761 || | |||||||| | | || || || | | |||| ||||| | || ||||| Sbjct 6857 GGTCAAAAGATTGAACCTCAGTGGTATATACCCATTATACCCATGGTATTGGTAAATGGT 6798 Query 14762 ACCGAGGGTATCGGTACGGGTT 14783 |||| ||||| ||||| |||| Sbjct 6797 GCCGATGGTATTGGTACTGGTT 6776 >seq172082 Length=56793 Score = 102 bits (112), Expect = 1e-16 Identities = 331/505 (66%), Gaps = 12/505 (2%) Strand=Plus/Minus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATGA 64772 |||||| | || ||||||||| | ||||| ||| | |||||| | | || | || Sbjct 15364 TTGGACCGTTGAGGAAGTTGATCTCTCCAAGGATAATTCTGACTGGGAAAGACTTACCGA 15305 Query 64773 AAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 64832 |||||| | || || || | |||||||||||||| | |||||||| || || Sbjct 15304 CAATGAACGTCATTTTATTTCACACGTTCTGGCATTCTTTGCCGCTTCCGATGGTATAGT 15245 Query 64833 TTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATT 64892 | ||| ||| | | | ||| | | || ||||| ||| || || || | || Sbjct 15244 TAATGAAAATCTTGTTGAACGTTTCTCCCAAGAGGTGCAAGTAACAGAGGCTCGTTGTTT 15185 Query 64893 CTACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATT 64950 ||| | | ||| |||||| |||| || || ||||| ||| | || ||| Sbjct 15184 CTATGGTTTCCAAATTGCCAT--GGAAAATGTACACTCCGAAATGTATAGTATTTTAATT 15127 Query 64951 GACAAATACATTAAGGATGGATCTGAA-AAGAAGCAGTTATTTGAAGCCATCCAAACTGT 65009 |||| |||||||||||| | | || |||| | ||||| | || || ||||| | Sbjct 15126 GACACTTACATTAAGGATCGTGATCAACGAGAA-TATCTATTTAATGCTATTGAAACTAT 15068 Query 65010 ACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT- 65068 ||| | || || ||||| | ||||| ||| ||| || | || || ||| Sbjct 15067 GCCAGCTGTTAAGCGTAAGGCCGATTGGGCCATGTCTTGGATTTCATCTAAATC-GGCTA 15009 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG--GTC 65126 || | ||||| || |||| ||||| ||| |||||||| |||||| || || Sbjct 15008 ATTTTGGTGAGCGTATTATTGCATTTGCTGCTGTCGAGGGTATTTTCTTCAGTGGTAGTT 14949 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 | || || |||| |||| | ||||| || ||||| ||||| ||||| ||||| || Sbjct 14948 TTGCTTCGATATT--TTGGCTCAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAA 14891 Query 65187 TGAACTTATTTCCCGAGATGAGGGT 65211 |||| | || || || ||||||||| Sbjct 14890 TGAATTGATCTCACGTGATGAGGGT 14866 >seq123671 Length=1854 Score = 93.3 bits (102), Expect = 5e-14 Identities = 130/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 75872 GATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTA 75930 |||| ||||||| || ||| | || |||||| || || || | || ||||||||||| Sbjct 816 GATGCTTTGGAAAGCAATTATTGAAGCACAGATTGAAACAGGCAATCCGTATATGCTTTA 757 Query 75931 CAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAA 75990 ||||||||| || ||| | |||| || || |||||||| ||| | | || | || Sbjct 756 CAAGGATGCATGCAACGAAAAGAACAATCAGAAGAATTTAGGAGTATTGAAAGGAAGTAA 697 Query 75991 TCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGC 76050 | ||||| ||||| |||||||| ||| || ||||| |||||||| || || || Sbjct 696 CTTATGCACTGAAATATTAGAGTATACAAGCAAAGATGAAGTAGCTGTTTGTAACTTAGC 637 Query 76051 A 76051 | Sbjct 636 A 636 >seq172236 Length=40455 Score = 82.4 bits (90), Expect = 9e-11 Identities = 211/319 (66%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 175188 CAGTGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCT 175247 ||| ||||||| || ||| | |||||| |||| || ||| | || | ||||| Sbjct 9909 CAGGGATGTTGCTGGCTGTGAAGAGGCCAAAATTGAAATTATGGAGTTCGTAAACTTTCT 9968 Query 175248 CAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGC 175307 ||| | || | |||| ||| |||||||| || || ||| ||| | | | Sbjct 9969 CAAAAATCCTCAACAATATATTGATTTGGGTGCCAAAATACCAAAAGGAGCCATGTTAAC 10028 Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 ||| || |||||||||||||| | || || ||||| ||| || ||| | ||||| Sbjct 10029 TGGTCCCCCTGGTACGGGAAAGACTTTACTTGCTAAAGCCACCGCTGGAGAAGCCAATGT 10088 Query 175368 CCCATTCA-TCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || || | | | || || | | | || |||| |||||||| ||||| || | Sbjct 10089 ACCTTTTATTACCGT-TTCCGGTTCTGAGTTCTTGGAAATGTTTGTGGGTGTTGGCCCTT 10147 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTG 175486 || || || ||| | || | ||| || || ||||| || |||||| | ||||| | Sbjct 10148 CTAGAGTGCGAGATATGTTCGCAATGGCACGAAAAAATGCTCCTTGTATTTTGTTCATCG 10207 Query 175487 ATGAGATTGATGCGGTGGG 175505 |||| |||||||| ||||| Sbjct 10208 ATGAAATTGATGCTGTGGG 10226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595134402684800