Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq175891 158 2e-33 seq5262 136 7e-27 seq137448 131 3e-25 seq22680 109 1e-18 seq185055 95.1 2e-14 seq150344 89.7 9e-13 >seq175891 Length=10111 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || | ||||| ||||||||| | ||||| |||||| Sbjct 8554 AATTTGCATGCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATT 8495 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | || || |||||||| || |||||||| || | ||||| Sbjct 8494 GTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTG 8435 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || ||||| ||||| | ||||| |||| |||||||||||| Sbjct 8434 ATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGA 8375 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||| || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 8374 AGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | |||| || | |||| ||| || || ||| Sbjct 9693 ATTTGCATACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTA 9634 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | || || |||||||| || || ||||| || | |||||| Sbjct 9633 TAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGA 9574 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || |||||||||||||| ||||| | || | |||| ||| |||||||| Sbjct 9573 TCTGGAGGAATACCTTCTTTATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGAT 9514 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | ||| ||||| || || || | ||||| || || |||||||| Sbjct 9513 GGCTCAACTTCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | ||| | || | |||| ||||| || || Sbjct 9009 ATTTGCATACCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTG 8950 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| || |||||||| || ||||| ||||| | |||||| Sbjct 8949 TAGTCCGACAATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGA 8890 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || |||||||| ||||| ||||| | || | ||| ||| ||||| || Sbjct 8889 TCTGGGGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGAT 8830 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||||| || ||||| || || |||| || |||||||| |||||||| Sbjct 8829 GGCTCAACTTCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || || |||| ||| | ||||| ||||| ||| || Sbjct 8325 ATTTGCATACCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTG 8266 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | || || |||||||| ||||||||||| || | |||||| Sbjct 8265 TAATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGA 8206 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || |||||||| ||||| | || | || ||||||||| ||| Sbjct 8205 TCTGGGGGAATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAA 8146 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || |||| || || || || || |||| || || || || ||||||||||| Sbjct 8145 GGTTCGACCTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||| ||||| || || | ||| || || || || ||||| ||||| || | Sbjct 9411 ATGTTATAATCGGACAAAGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGT 9352 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| || |||||||||||||| ||||| | || | |||| ||| ||| Sbjct 9351 TGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTA 9292 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||| ||||| | || || || || || || | || || || || |||||| Sbjct 9291 TCAGATGGCTCTACTTCCAAGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGC 9232 Query 193359 AT 193360 || Sbjct 9231 AT 9230 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || |||||||| ||||| ||||| | || | |||| ||| || Sbjct 10111 TGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTTGCCTTGACATTTTCAATGGTG 10052 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | ||||||||| | || || ||||||||||| | || || || || |||||| Sbjct 10051 TCGGATGGCTCAACTTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTGACGAAGATTTGC 9992 Query 193359 AT 193360 || Sbjct 9991 AT 9990 >seq5262 Length=11329 Score = 136 bits (150), Expect = 7e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| |||||||| | || || |||||| ||||| || | || | | ||| || Sbjct 3170 ACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACCATCTTCC 3229 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || |||||||| ||||||||||| | || ||||| || || ||||| ||||| || || Sbjct 3230 AACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTTGTCCTGA 3289 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| ||| | |||| ||| ||||| |||| || || || || || || || ||| Sbjct 3290 ATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGATGGTCTTA 3349 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| |||||||| |||||| Sbjct 3350 CCCGTTAGGGTTTTAACAAATATCTGCATT 3379 >seq137448 Length=735 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 ||||| |||||||||||| || | || ||||| || ||| ||| || ||||||| Sbjct 21 TTTATTTACCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTAT 80 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| ||| || || ||| || | || || || ||||| || ||||| || || | Sbjct 81 AGTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGT 140 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 |||||||||| |||||||| || |||||||| | |||| ||| ||| ||||| Sbjct 141 CAGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCC 200 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 |||||||| | || || || || || || || ||||| ||||| |||||||||| Sbjct 201 CTTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTT 257 >seq22680 Length=2395 Score = 109 bits (120), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCT--CTTTAGAAATATTATAGTC 193189 |||| ||||||| || ||||||||||| || || || | |||| | || || ||||| Sbjct 773 TACCTCCTCTCAGTCTTAGTACCAGATGTAAGGT-GCTTTCCTTTTG-GATGTTGTAGTC 830 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 | | || || ||| || | ||||| || || || || ||||| ||||| || || Sbjct 831 GTTAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGG 890 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| ||||||||||| ||||| || || | ||||| ||| || || || | || Sbjct 891 AGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTGCTTTC 950 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || | | ||| || || |||||||| ||||| ||||| |||||||||| Sbjct 951 GACCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTT 1003 >seq185055 Length=12631 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| || || || || || | |||||||| || || || |||||||| Sbjct 12497 ATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGAATGCCTTCTTT 12556 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | || | |||| ||| |||||||| | || ||||| | ||| || Sbjct 12557 ATCTTGGATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTCGACTTCCAAAGTGAT 12616 Query 193325 AGTTTTACCTGT 193336 |||||| || || Sbjct 12617 AGTTTTGCCGGT 12628 >seq150344 Length=698 Score = 89.7 bits (98), Expect = 9e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 ||||| |||||||||||| || | ||| ||||| || ||| ||| || ||||||| Sbjct 559 TTTATTTACCACCTCTCAGTCTCAATACAAGATGTAAGGTACTCTCCTTCTGTATATTAT 618 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| ||| || | ||| || | || ||||| ||||| || ||||| || || | Sbjct 619 AGTCATTTAATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAAATATCAATCTTTGCTGGT 678 Query 193246 CAGGAGGTATTCCTTCTTT 193264 |||||||||| |||||||| Sbjct 679 CAGGAGGTATCCCTTCTTT 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897490056427200