Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq172082 163 4e-35 seq137448 136 6e-27 seq175891 132 7e-26 seq22680 105 1e-17 seq185055 93.3 6e-14 >seq172082 Length=56793 Score = 163 bits (180), Expect = 4e-35 Identities = 364/542 (67%), Gaps = 9/542 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| ||||||||| |||||||| ||||| | || || ||||| || || || Sbjct 14844 AAACA-GCAAAATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTA 14902 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| | ||| | ||| || |||||||||||||| || ||||||| | ||| Sbjct 14903 AGGCCAGGCATAAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAG 14962 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATTTATT 18330 || |||||||| || ||| || || || || | | ||| ||||| | ||||| Sbjct 14963 AAAATACCCTCGACAGCA-GCAAATGCAATAATACGCTCACCAAAATTAGCCGATTTA-- 15019 Query 18331 GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTAT 18390 | | | ||||| ||||| || | | | | || ||| | || || Sbjct 15020 GATGAA-ATCCAAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAAT 15078 Query 18391 AGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGA 18450 ||||||||| | || ||| || | ||| || || |||||||| ||||| | | Sbjct 15079 AGCATTAAATAGATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACT 15138 Query 18451 ATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC 18510 ||||||||| || |||| ||||||| || || || |||| ||| || | | |||||| Sbjct 15139 ATACATTTCGGAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTC 15198 Query 18511 GGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGC 18570 | ||| | ||| | || | ||| || | ||| |||||||||||||| || | Sbjct 15199 TGTTACTTGCACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGA 15258 Query 18571 AGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT 18630 || || || ||||||| ||| | | ||| ||||| |||||| || | || | | Sbjct 15259 AGCGGCAAAGAATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTC 15318 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| ||| |||| || || ||||||||||| || |||||||| |||| ||| || Sbjct 15319 CCAGTCAGAATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTTCAGC 15378 Query 18691 CT 18692 || Sbjct 15379 CT 15380 >seq137448 Length=735 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 |||||||||| ||| | |||||| | || ||||| || |||||||| ||||| |||| Sbjct 257 AAATGCAAATCTTTGTCAAAACACTCACGGGAAAGACAATTACATTGGAAGTTGAAGGGG 198 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 ||||| ||| || || || |||||||| || |||||||| |||||||| || | Sbjct 197 GTGATACAATTGAGAATGTAAAGGCGAAAATACAGGACAAAGAAGGGATACCTCCTGACC 138 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 | ||||||||||| | ||| || |||||||| || ||| || || ||| || |||| Sbjct 137 AGCAAAGATTGATATTTGCAGGGAAGCAGCTTGAGGATGGAAGGACATTAAATGACTATA 78 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||| || ||| || | ||| | ||||| ||| | ||||| ||| Sbjct 77 ATATACAGAAGGAGAGTACTTTACATCTTGTGTTGAGACTGAGAGGTGGT 28 >seq175891 Length=10111 Score = 132 bits (146), Expect = 7e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||||||||||||||| || || ||||| || ||| Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCT 9061 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| || ||||| ||||| || || ||||| ||| Sbjct 9062 GATACTATAGAGAATGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAA 9121 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||||||||| | |||||| | || || || ||||||| Sbjct 9122 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATA-- 9179 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || ||||| || || || Sbjct 9180 ACATCCAAAAGGAATCTACCCTTCACTTGGTTTT 9213 Score = 129 bits (142), Expect = 9e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||| || || || ||||| || ||||| || ||| Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || |||||| |||||||||||||| || |||||||| || Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||||||||| | |||||| | ||||| || ||||||| Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATA-- 9407 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || ||||| || || || Sbjct 9408 ACATCCAAAAGGAATCTACCCTTCACTTGGTTTT 9441 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||||||||| ||||| || || || || || || ||| Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| |||||| ||||| || ||||| || || ||||| ||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || || || | ||||| | || || || ||||| ||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || | ||||| || ||| | ||| | || || Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGG 8544 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| ||||| || || ||||| || || ||||| || || Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || || ||||| |||||||||||||| || |||||||| ||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| || ||||| || | ||||| | ||||| || ||||||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATA-- 9635 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| ||| | || ||||| || || || Sbjct 9636 ACATCCAAAAGGAGTCTACCCTTCACTTGGTTTT 9669 >seq22680 Length=2395 Score = 105 bits (116), Expect = 1e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 |||||||||| ||| | |||||| | || ||||| || || | || || |||||| Sbjct 1003 AAATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCA 944 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | || |||||| ||| || || ||||| |||||||| || |||||||| | Sbjct 943 CAGACACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACC 884 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||||||||||| | || ||||| |||||||| ||| Sbjct 883 AACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGAT 846 >seq185055 Length=12631 Score = 93.3 bits (102), Expect = 6e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 155844 TTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAA 155903 ||||| || |||||||| || || ||||||||| || |||| ||| ||| || || Sbjct 12631 TTGACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAG 12572 Query 155904 AATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGT 155963 ||| || ||||||||||||||||| || ||||| |||||| | ||||| | || || Sbjct 12571 GCTAAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGC 12512 Query 155964 AAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGC 156021 || || | || ||| | | ||| | || || || | | ||||||| || | || | Sbjct 12511 AAACAATTAGAGGATGGCCGTACTCTGTCTGACTACA--ACATCCAAAAGGAATCTACTC 12454 Query 156022 TTCATTTAGTGTTA 156035 | ||||| ||| || Sbjct 12453 TCCATTTGGTGCTA 12440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730111298936000