Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq175891 158 2e-33 seq188148 136 7e-27 seq172082 131 3e-25 seq5262 123 5e-23 seq151072 91.5 3e-13 seq22680 89.7 9e-13 seq185055 87.8 3e-12 >seq175891 Length=10111 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || ||||||||||| || | |||| ||||| || || ||||| Sbjct 8775 ATACCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCG 8716 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || ||||||||||||||||| || ||||| | |||||| || || Sbjct 8715 GACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGG 8656 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| || || ||||||||| || | ||| Sbjct 8655 GGAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCA 8596 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 || ||||| ||||| ||||| || ||||| ||||||| ||| || ||||| Sbjct 8595 ACCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| |||| || ||||| | |||| ||||| ||| || ||||| Sbjct 8319 ATACCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCG 8260 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| |||| |||||||||||||| |||||||| || | ||||| || || Sbjct 8259 GACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGG 8200 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| |||||| || || || |||||||| || | ||| Sbjct 8199 GGAATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCG 8140 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtttt 172072 || |||| || ||||| || |||||||| || || | ||| || |||||||| Sbjct 8139 ACCTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||||||| ||||| || || | ||||| |||||| ||||| || || | || || Sbjct 8532 CGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCG 8473 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| ||||||||||| || | ||||| || || || |||||||| || Sbjct 8472 TCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTG 8413 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| ||||||||| |||||||| || | || || || | ||| ||| Sbjct 8412 TCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATG 8353 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 ||||| ||||| ||||| || | || || ||||| Sbjct 8352 GTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || || || | |||| ||| || || |||||||| Sbjct 9687 ATACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCG 9628 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| |||| ||||||||||||||||| ||||| || | ||||| || || Sbjct 9627 GACAAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 9568 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| || ||||| || ||||| || | || Sbjct 9567 GGAATACCTTCTTTATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCA 9508 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 ||||| | ||| || || || || || || ||||| | ||| || ||||| Sbjct 9507 ACTTCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || ||||||||||| || | |||| ||||| || || || || Sbjct 9003 ATACCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCC 8944 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||||||||||||||||||| ||||| | ||||| || || Sbjct 8943 GACAATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 8884 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| || || || || ||||| || | || Sbjct 8883 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCA 8824 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 ||||||| || || || || || ||||| || || | || || ||||| Sbjct 8823 ACTTCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || || || | |||| || || || |||||||| Sbjct 9459 ATACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCG 9400 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || ||||| || ||||| || ||||| || | || || || || Sbjct 9399 GACAAAGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGA 9340 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| || ||||| || ||||| || | ||| Sbjct 9339 GGAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCT 9280 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 ||||| | |||||||| || || || || || || | ||| || ||||| Sbjct 9279 ACTTCCAAGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 >seq188148 Length=18106 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | ||| ||||||||||| | || || || || || Sbjct 3607 ATGATACCACCACGAAGGCGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 3666 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || |||||||||||||| || || || || | ||||| || Sbjct 3667 TCGGACAAGGTACGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCT 3726 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || |||||||| ||||| |||||| || ||||| || || || || | Sbjct 3727 GGGGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGC 3786 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAt 172069 || ||||| | |||||||||||||||||||| ||||| | ||| |||||||| Sbjct 3787 TCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq172082 Length=56793 Score = 131 bits (144), Expect = 3e-25 Identities = 491/768 (64%), Gaps = 28/768 (4%) Strand=Plus/Plus Query 38898 AAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAATAATCT 38956 || ||| |||||||| | ||| || || |||| | || ||| || || || | Sbjct 14622 AACTCATATGGATTTGT--TATCATCTTACCTTTCCCACCTCCAATTCAACCAACAAACG 14679 Query 38957 ATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAA 39016 |||||||||||| |||| ||||| |||| |||| |||||||||||| | || || | Sbjct 14680 ATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAAATTTAC 14739 Query 39017 TGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc---at 39073 |||| ||||| | ||||| | ||| |||| ||| || | ||| || || Sbjct 14740 GGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATGATTTCAAT 14799 Query 39074 aattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAA 39133 |||| ||| | | | | || || ||| | | ||| || ||||| ||||| Sbjct 14800 AATTCTATCCCTACTAGG-ACGTTGTACCAAATGTT-TAAACAT-TA--AAACA-GCAAA 14853 Query 39134 ATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCAT 39193 ||| ||||||||| || || | || || |||||||| || || | || ||||| Sbjct 14854 ATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCAT 14913 Query 39194 TAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTC 39253 | || | || || ||||||||||| || |||||||||| | ||||| |||||||| Sbjct 14914 AAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTC 14973 Query 39254 CACACACGCAAATGCTATTATTCTTGCTCCAAACATTA----ATTTATCATCTAAAATCC 39309 ||| |||||||| || || | | ||||| |||| |||| | | |||||| Sbjct 14974 GACAGCAGCAAATGCAATAATACGCTCACCAAA-ATTAGCCGATTT---AGATGAAATCC 15029 Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369 || ||||||||||| || || || | || || ||| |||| ||||| ||||||| Sbjct 15030 AAGACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATA 15089 Query 39370 ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAG 39429 | | | ||||||||| | Sbjct 15090 GATATTCTCGTTGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGG 15149 Query 39430 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC-TGA 39488 | |||||| |||||| || ||||| || ||| || | || |||| ||| || Sbjct 15150 AGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTG-TTACTTGC 15208 Query 39489 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 39548 || || |||| |||||||| | ||| ||| || |||||||| || || || ||| Sbjct 15209 ACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAG 15268 Query 39549 AATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA---AGAT 39605 ||||| | ||| | | ||||||||| |||||| || | | ||||||| ||| Sbjct 15269 AATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGA- 15327 Query 39606 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | ||| || || | ||| ||||| || | |||||||| |||||| Sbjct 15328 --ATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCT 15373 >seq5262 Length=11329 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| || || || || || || || | || || |||||| || || || Sbjct 3152 CCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAA 3211 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || ||||| ||||| |||||||||||||| | || || || ||||| Sbjct 3212 AGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 3271 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || || || ||| ||||| || ||||| || | ||| || Sbjct 3272 ATTCCCTCTTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACC 3331 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAtt 172070 || || || ||||| ||||| |||| ||||||| |||||||||||| Sbjct 3332 TCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCATT 3379 >seq151072 Length=631 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 39117 tataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 |||| ||||| ||||| || ||| | |||||||| || ||||| | |||||| || Sbjct 164 TATAACAAACAAGCAAACTCACAATGCATGCCTTCGTCTCTTGATATTAGTTCATTGCTG 105 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAA---AACTA 39233 |||| | ||||||||||| ||| || || | |||||| || | |||| ||| | Sbjct 104 TAAGTCAGACCTGGCATTAAGTTTCTTTTCTTCAACCAAAAGATAGCAGCAAATGAACCA 45 Query 39234 CTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTT 39278 ||| ||||| ||||| || ||||| |||||||||| | |||| Sbjct 44 CTAAAAAAG---ATACCTTCAACACATGCAAATGCTAGCAATCTT 3 >seq22680 Length=2395 Score = 89.7 bits (98), Expect = 9e-13 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCT--CTTTAGAAATATTATAATC 171898 |||| ||||| |||| || ||| | |||||| || || | |||| | | | || || || Sbjct 773 TACCTCCTCTCAGTCTTAGTACCAGATGTAAGGT-GCTTTCCTTTTGGA-TGTTGTAGTC 830 Query 171899 TGATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAG 171957 | ||| | || ||| || || | |||||||| || || || ||||| |||||||| | Sbjct 831 -GTTAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTG 889 Query 171958 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATT 172017 | || ||||||||||| ||||| || || |||||| || || || |||| || Sbjct 890 GAGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTGCTTT 949 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAttt 172071 | || || | | || || || || |||| |||||| | || || ||||||| Sbjct 950 CGACCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTT 1003 >seq185055 Length=12631 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| |||| || ||||| | ||||| || || || || || || || Sbjct 12426 CCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12485 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || || |||||||| ||||| || || || | ||||| || || || Sbjct 12486 AGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGA 12545 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||||||||| || ||| || ||||| || ||||| || | ||| ||| Sbjct 12546 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTCGACT 12605 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAA 172048 || | ||| || ||||| || || || Sbjct 12606 TCCAAAGTGATAGTTTTGCCGGTCAA 12631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902958469068000