Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq175891 118 9e-22 seq20636 105 6e-18 seq188148 93.3 3e-14 seq22680 91.5 1e-13 >seq175891 Length=10111 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| || || || ||||||||||| || | || |||||| | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | |||||| || ||| ||||| ||||| | ||| |||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || ||||| |||| || | | ||| || | |||||||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||||||||||||| || ||||| |||| ||| Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTA 8530 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || |||||||||||||| || || ||| | ||| ||||| Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || || || ||||||||||| | ||| |||||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | ||| |||||||| |||| |||| | | ||| || |||| |||||| Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| | ||| | || ||| | || || || || Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGTGG 9000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| ||||| || ||||| ||||| | || || ||| Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || || ||||||||||| | ||| |||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | || |||||||| |||| |||| | ||| || | ||||||||| Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || |||||||||||||| | ||| | || ||| | || || || || Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGG 8772 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || || || ||||| ||||| ||||| ||| | || || ||| Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| | | | || || || ||| || || || || | ||| ||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| ||| |||||||| |||| || | | || || | |||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 110450 AACATTCAAAAAGAATCTAC 110469 |||||||||||||||||||| Sbjct 8267 AACATTCAAAAAGAATCTAC 8286 >seq20636 Length=14080 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 103655 CCCGAGTATGCAATAGAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCGCGCGGTTTG 103714 ||||| ||||| |||||| | || |||||||| || || |||| ||||| | | || Sbjct 5568 CCCGACTATGCTATAGAAACGGCTCGTTTGCGTACCTTCACCGAATGGCCTAGACATATG 5509 Query 103715 AAGCAACATCCCGAGATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAA 103774 || ||| | || | | | |||||||||||||||||||| ||||| | | | || Sbjct 5508 AAACAAAAACCTGCACAATTGGCCGAAGCTGGTTTCTTTTATACCGGTACAGGTGATCGC 5449 Query 103775 GTCAAATGCTTTTACTGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGG 103834 |||||||| || ||| || ||||| || ||||||| || |||| ||||| ||| Sbjct 5448 GTCAAATGTTTCAGTTGCGGTGGTGGTCTAAAGGATTGGGATGAAAATGATGACCCCTGG 5389 Query 103835 CAACAACACGC 103845 |||||||||| Sbjct 5388 GAACAACACGC 5378 >seq188148 Length=18106 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || |||||||||||||| || |||||||||||| | ||| |||||| | Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || || ||||||||||| | ||| |||||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | || | || |||||||| |||| |||| | || || | || |||||| Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || || || |||| Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGT 3631 >seq22680 Length=2395 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCT 110329 |||||||||| ||||||||||| |||| || || || || || | || || | | Sbjct 1003 AAATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCA 944 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 | || || ||| | |||||| ||||| ||||||||||| | || || Sbjct 943 CA-GACACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGAC 885 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | || ||||||||||| ||||||| || || | || ||| Sbjct 884 CAACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTAC 825 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAA 110508 ||||| ||||| ||| || || || |||| |||||||| |||| || ||||| || Sbjct 824 AACATCCAAAAGGAAAGCACCTTACATCTGGTACTAAGACTGAGAGGAGGTAAAAAGAA 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411873236162780