Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq175891 187 5e-42 seq5262 176 9e-39 seq185055 159 7e-34 seq137448 127 4e-24 seq22680 127 4e-24 seq188148 122 2e-22 >seq175891 Length=10111 Score = 187 bits (206), Expect = 5e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| | || || |||| || |||||||| || ||||| |||||||| | | | Sbjct 8535 AAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGC 8476 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| | |||||| |||||||| || | | |||||||||||| || ||||||||| Sbjct 8475 CCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 8416 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || |||||||| || ||||||||||||||||| ||||| ||| || || |||||||| Sbjct 8415 TTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTG 8356 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| ||||| ||||| || ||||| Sbjct 8355 ATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| ||||| || ||||| || || || || |||||||| | Sbjct 9686 TACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGG 9627 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| | |||||| ||||| || || | | |||||||||||||| Sbjct 9626 ACAAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 9567 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| || ||||| || ||||||||||| ||||| || || | Sbjct 9566 GAATACCTTCTTTATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAA 9507 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || |||||||| ||||| || || || || || ||||| Sbjct 9506 CTTCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| ||||| || |||||||| || || || |||||||| | Sbjct 9458 TACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGG 9399 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| | || || || || || || | | ||| |||||||||| Sbjct 9398 ACAAAGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAG 9339 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || || || ||||||||||| |||||| || |||| Sbjct 9338 GAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTA 9279 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 9278 CTTCCAAGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| || || || ||||||||||| || || || ||||| | Sbjct 8318 TACCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGG 8259 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| | |||||| || ||||| || | | |||||||||||| | Sbjct 8258 ACAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGG 8199 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||||||||| || || || || || ||||| |||||| |||||| | Sbjct 8198 GAATACCCTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGA 8139 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || || || |||||||| || || ||||| || || || |||||| Sbjct 8138 CCTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATT 8089 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||||||| || ||||||||||| || || || || || || | | | || ||||| Sbjct 8982 ACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCATCTTCC 8923 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | |||||| ||||||||||||| | |||||||||||| || || ||||| || ||||| Sbjct 8922 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTGTCTTGG 8863 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || || || || || |||||||| |||||| || || ||||| || || || |||||| Sbjct 8862 ATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATAGTCTTG 8803 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||||||||| || ||||| Sbjct 8802 CCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| ||| ||||| || |||||||| || || || |||||||||| Sbjct 9230 TACCACCACGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAG 9171 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | || || || || || || | | |||||| ||||| | Sbjct 9170 ACAATGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGG 9111 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || || || || |||||||| || || |||||| || |||| Sbjct 9110 GAATACCTTCCTTATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTA 9051 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || || ||||| || || ||||| || ||||| Sbjct 9050 CTTCCAAGGTGATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| | |||||||| || ||||||||||| || || || ||||| | Sbjct 8774 TACCTCCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGG 8715 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | |||||| ||||| ||||||| | ||||||||||| | Sbjct 8714 ACAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGG 8655 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| || || ||||| || ||||| || ||||| |||||| | Sbjct 8654 GAATACCTTCTTTGTCTTGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAA 8595 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || || || || || || || || ||||| Sbjct 8594 CCTCTAGTGTAATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||||||||| || ||||| || ||||| || ||||| || ||||||||||| || Sbjct 10111 TGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATTTTTGCCTTGACATTTTCAATGGTG 10052 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || || || |||||||| || || || || |||||||| ||||| || || || ||| Sbjct 10051 TCGGATGGCTCAACTTCCAAGGTGATGGTTTTACCTGTCAAGGTCTTGACGAAGATTTGC 9992 Query 82809 AT 82810 || Sbjct 9991 AT 9990 >seq5262 Length=11329 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| ||| ||||||| || ||||| || || ||||| || ||||| ||| | | ||| Sbjct 3163 ACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACC 3222 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | |||||||||||||| |||| | ||| |||||||| || ||||| || || Sbjct 3223 ATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTT 3282 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||| ||||| ||||||||||| |||||| |||||| || || | || || Sbjct 3283 GTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGAT 3342 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || | || || ||||||||||||||| Sbjct 3343 GGTCTTACCCGTTAGGGTTTTAACAAATATCTGCATT 3379 >seq185055 Length=12631 Score = 159 bits (176), Expect = 7e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || ||||||||||| || || || || || ||||| Sbjct 12426 CCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 12485 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || |||| |||||| ||||| ||||| | | |||||||||||| || Sbjct 12486 AGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGGGA 12545 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| ||||| || || ||||||||||| ||||| ||||| ||| Sbjct 12546 ATGCCTTCTTTATCTTGGATCTTAGCCTTAACATTTTCAATGGTATCGGATGGTTCGACT 12605 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAA 82789 |||||||| || || ||||| ||||| Sbjct 12606 TCCAAAGTGATAGTTTTGCCGGTCAA 12631 >seq137448 Length=735 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| | || || | || | |||| || |||||||||||||| ||| Sbjct 27 TACCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATTATAGTCAT 86 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || || || || || || || ||||| || | |||||| || || |||| Sbjct 87 TTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTGGTCAGGAG 146 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||| ||||| || || || || || || |||||||| ||||| |||||| ||| | Sbjct 147 GTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACCCCCTTCAA 206 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| || || ||||| || || | || || ||||| || |||||| Sbjct 207 CTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATT 256 >seq22680 Length=2395 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||| | || || | || | || ||| || || || || || || Sbjct 773 TACCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGT 832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | || || || || || ||||| || || || || | ||||||||| ||||||| Sbjct 833 TAAGGGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAG 892 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| |||||||||||||| ||||| ||||| || | ||| | Sbjct 893 GGATTCCTTCTTTGTCTTGGATCTTTGCTTTTACGTTTTCGATCGTGTCTGTGCTTTCGA 952 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| | ||| ||||| ||||| | || || ||||| || |||||| Sbjct 953 CCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATT 1002 >seq188148 Length=18106 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || | ||| ||||| || || || || || || || | | | ||| Sbjct 3625 CGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCA 3684 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | |||||| || || ||||| | | |||||||||||| || || ||||| || Sbjct 3685 TCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTG 3744 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || || || ||||||||||| || || ||| || |||||||| || || Sbjct 3745 TCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATG 3804 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || || || || || |||||||| Sbjct 3805 GTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979406118443940