Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq187981 86.0 1e-11 seq172035 86.0 1e-11 >seq187981 Length=38915 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 52142 ATCGTAGCATCCCATAAGAAAACTGGATAGAATACCAGATTTATTACCTTTTCCGTAATA 52201 ||| || || ||||| ||||| || || | |||| || ||||| || || | Sbjct 26872 ATCATAACAACCCATTAGAAATATGCTAAGTACACCACCCTTTTTACCAGAACCATATGA 26931 Query 52202 AGCACCCAGAACTACTAGATCAGCTTTATCTGCCATAATACAACCATCTAAGTAGTCttt 52261 |||||||| ||| |||| ||| || ||||||||||| || |||| | || ||||| Sbjct 26932 AGCACCCAAAACAACTAAATCTGCCGTATCTGCCATACGACCACCAAACAGATAATCTTT 26991 Query 52262 ttttATTTTCAGCCATCTACGCATACCAGGTTCGTATACACCTTTTGCATCTTTGAGTAC 52321 ||| | ||| ||||| | |||| ||||||||| || ||| | |||||| | || Sbjct 26992 TTTAACTTTTAGCCAACCACGCTTACCAGGTTGATAAGTTCCTGAAGGATCTTTTAAGAC 27051 Query 52322 AAATCCTTCTATATT 52336 | |||||||| ||| Sbjct 27052 TACTCCTTCTAAATT 27066 >seq172035 Length=46076 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 || ||||| | |||||||| | ||||||| || || | | || || ||||||||| Sbjct 18918 ACTCATGATGATTTATGGAATTCGGCACAAATTCAATTGGTAAAGGAGGGGAAAATGCAT 18859 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | |||||||| ||||| |||||||||||||| | |||||||| | |||| ||| | Sbjct 18858 GGCTTTTTACGCATGTATTGGGCTAAAAAGATTTTAGAATGGACTGAATCTCCCGAACAG 18799 Query 183130 GCTTT 183134 ||||| Sbjct 18798 GCTTT 18794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901237818505600