Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq173136 156 1e-32 seq116898 123 6e-23 seq187911 111 4e-19 seq172937 111 4e-19 seq151072 107 5e-18 seq123671 102 2e-16 seq4840 86.0 1e-11 >seq173136 Length=30018 Score = 156 bits (172), Expect = 1e-32 Identities = 557/867 (64%), Gaps = 9/867 (1%) Strand=Plus/Plus Query 110279 TTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTT 110338 |||| |||||| | || | | | ||||||||||| ||||| || || | | ||||| Sbjct 2031 TTATGATCGTGATTTTGGTTATAATTATTTTGGTTTTAAAACACTGGAGAGGTCGTATTT 2090 Query 110339 ACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGAT 110398 ||| | ||||| |||| | || | || || || ||||| | | || || || Sbjct 2091 ACTGAAAATGAATGGTAAGATTGTGGAGAGACCACAGCATATGTTAATGAGGGTAGCTAT 2150 Query 110399 TGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAA 110458 ||||| |||||| | |||||| | | | || ||| ||| || | || | | Sbjct 2151 AGGTATACATGGAGAGGATATTGATTCGGCCATAGAAACGTATAATTTGTTGTCTGAGCG 2210 Query 110459 GAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGC 110518 | || ||||| | || || ||||| || | |||||| | ||||||| | Sbjct 2211 TTATTTTACCCATGCCTCGCCCACGTTATTTGCGGCTGCCACTAATAGGCCACAATTGTC 2270 Query 110519 TTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAA 110578 |||||||| || | || | |||||||||||| ||||||| | | | | Sbjct 2271 CTCTTGCTTCCTGTTGACTATGGTGGCTGATTCTATTGAGGGTATTTTCAAGTCGGTGGA 2330 Query 110579 AGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCG 110638 | || |||| | ||||| || | || || || ||||| | || || |||| | Sbjct 2331 ACAATGTGCTATGATTTCCAAGTCGGCGGGTGGTATAGGTATAAATGTCCACTGTATTAG 2390 Query 110639 CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTT 110698 | || || | ||||| | | || || | || | ||| || || || ||| | Sbjct 2391 GGCCAAGGGTACTTCTATCGATGGAACTAATGGCACCTCTAATGGTCTGGTACCGATGCT 2450 Query 110699 AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTC 110755 || || || || | || ||||| | ||||||||| || | ||| | Sbjct 2451 TAGGGTGTTTAATAATGTGGCCCGTTATGTAGACCAAGGTGGTGGCAAACGTCCTGGAGC 2510 Query 110756 ATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAA 110815 |||||||| ||| | |||||||||||||||||||| |||||||| ||||| | || Sbjct 2511 CTTTGCTATTTATTTGGAACCTTGGCATTCAGATATTTTTGAATTTTTAGATTTAAAGAA 2570 Query 110816 AAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGA 110875 |||| || ||||| || ||||| | ||| | |||||||| | |||||| | || Sbjct 2571 AAATACTGGTAAAGAAGAGCACAGAGCTAGAGATCTTTTTTATGCTTTATGGATTCCCGA 2630 Query 110876 TTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTC 110935 || || |||||| | || ||||||| || ||||| | |||||||| ||| | Sbjct 2631 CTTGTTTATGAAAAGAGTAGAAGAAAACGGTGACTGGTCCTTAATGTGTCCCCATAAATG 2690 Query 110936 TCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA 110995 ||| || || ||||| | || ||||||||||| | | || || |||||||| Sbjct 2691 TCCCGGCCTGCAGGATGTCTGGGGTGAAGAGTTTGAACAGTTGTATACCAAGTATGAAAA 2750 Query 110996 AGAAGGC-AAGTT--TCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGA 111052 ||||||| ||| | ||||| || || || | || ||||| ||| |||| Sbjct 2751 AGAAGGCAAAGCTAATCGCA---CTGTTAAGGCACAGGCTCTATGGTTTGCCATCATTGA 2807 Query 111053 ATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATC 111112 | ||||| |||||||| || || || || || || || ||| ||||||||| Sbjct 2808 GGCCCAAGTAGAAACTGGTACACCCTACATGTTATACAAGGATGCCTGTAATCGCAAGAG 2867 Query 111113 TAATCAAATGAATTTAGGAACAATTAA 111139 ||| || ||| |||| || ||||| Sbjct 2868 TAACCAGCAAAATATAGGCACTATTAA 2894 >seq116898 Length=696 Score = 123 bits (136), Expect = 6e-23 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 ||||||||| |||||| ||| || |||| ||| ||||||||| | |||||||| Sbjct 202 TGATATTGTAGAAAGACATCTGATGGATGGTGATGTGGTACTGTTCAATCGACAACCATC 261 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATT-GACATTTC 305411 ||||| ||| ||| ||||| || |||||||| || ||| | |||||| Sbjct 262 TTTGCATCGGATGAGTATCATGGCACACAAAGTCAAGGTGC-ATCCACACAAGACATTAA 320 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 | || |||| | ||| ||||| ||||| ||||| ||||||||||| ||||||||||||| Sbjct 321 GGTTCAATGAATGTGTATGTACACCTTACAATGCAGATTTTGATGGTGATGAAATGAATA 380 Query 305472 TGCATGTACCTCAATCA 305488 | |||||||| ||| || Sbjct 381 TACATGTACCACAAACA 397 >seq187911 Length=32483 Score = 111 bits (122), Expect = 4e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||| | ||||| || ||||||||||||| || ||| |||| | | ||| Sbjct 8491 GTTCTCTTCAATCGTCAACCTTCTTTGCATAAAATGTCCATTATGTGTCATCAGGCGAAA 8432 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | | | || ||||| || || | | |||||||||| || |||||||| ||| Sbjct 8431 GTGCAACCGCAAAGAACTTTTCGTTTCAACGAATGTGCTTGTACTCCGTATAATGCTGAT 8372 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||||| |||||||||||| | ||| |||| ||| Sbjct 8371 TTTGATGGTGATGAAATGAATTTACATTTACCCCAA 8336 >seq172937 Length=23020 Score = 111 bits (122), Expect = 4e-19 Identities = 212/306 (69%), Gaps = 11/306 (4%) Strand=Plus/Minus Query 304778 GATGATTTGACATTAAAATACTCTGATATCATTAAATATAACAATTTAATTAAGAAAAAG 304837 |||||||| || ||| || ||||| || ||| ||||||| ||||| |||||| Sbjct 14978 GATGATTTAACGCATAAACTTTCAGATATTATAAAAGCTAACAATG-AATTACGAAAAAA 14920 Query 304838 TTAACG-AGCGATTCTAATTCACATTTGGTTATTGATTATTCAAACAATTTACAATATCA 304896 | || | | || | || | | ||| | |||| || || ||| | ||||||| ||| Sbjct 14919 TGAAGGCACCGGTGCTGCTGCTCATGTTATTATGGAAAATATAAAAATGTTACAATTTCA 14860 Query 304897 TATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC----AGGCATCTCAAAGAT 304952 | | || || ||| | |||||||| || | || ||||| || ||| |||| | Sbjct 14859 TGTAGCCACTTTAGTAGATAATGATATGCCCGG---TATGCCAAGAGCCATGCAAAAG-T 14804 Query 304953 CTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAG 305012 | || | ||||||||| | ||| | ||| | || |||||||| ||||||||||| | Sbjct 14803 CGGGTAAACCTTTAAAAGCTATCAAATCACGTCTAAAGGGTAAAGAAGGTCGTATTCGTG 14744 Query 305013 GTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTC 305072 ||||| | |||||||||||||| ||||| ||| | | ||| || || || || || | Sbjct 14743 GTAATTTGATGGGAAAACGTGTAGATTTCTCAGCACGTACTGTCATTACTCCAGA-TCCC 14685 Query 305073 AAATTA 305078 || ||| Sbjct 14684 AATTTA 14679 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| || |||||| ||| | |||||| | || ||| | ||||||||||| Sbjct 14456 AGACATTTACGAGATGATGATTTAGTTATTTTCAATCGTCAGCCAACTTTGCATAAAATG 14397 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || || || ||| || | | ||||| || | || | || Sbjct 14396 AGTATGATGGGTCATCGTGTTAAGGTTTTACCTTGGTCTACATTCCGTATGAACTT--GT 14339 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 | ||||| || |||||||| |||||||| ||||||||||||||| ||||||| || Sbjct 14338 -CATGTACCTCACCCTATAATGCAGATTTTGACGGAGATGAAATGAATTTGCATGTGCCA 14280 Query 305483 CAATCAAAGGTTACAATGACTGAATTA 305509 ||||||| || |||| ||||| || Sbjct 14279 CAATCAATGGAAACAAGAGCTGAAGTA 14253 >seq151072 Length=631 Score = 107 bits (118), Expect = 5e-18 Identities = 196/282 (70%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 131857 AAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTAT 131916 |||| | |||| ||||| |||||||||||||| || ||| ||| | || |||||| Sbjct 3 AAGATTGCTAGCATTTGCATGTGTTGAAGGTATCTTTTTTAGTGGTTCATTTGCTGCTAT 62 Query 131917 CTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTC 131976 ||||||| | ||||| | || ||||| || || | | |||| || | || || Sbjct 63 CTTTTGGTTGAAGAAAAGAAACTTAATGCCAGGTCTGACTTACAGCAATGAACTAATATC 122 Query 131977 GAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAA 132036 ||||| |||| ||||| ||| |||||| || | || || | | || ||| Sbjct 123 AAGAGACGAAGGCATGCATTGTGAGTTTGCTTGTTTGTTATACAGCATGTGTGAGAATAG 182 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 | ||||| || |||| ||| | || |||| ||||||||||| || ||||| ||||| Sbjct 183 ATGTGATG---ATGATATAAAAGGAATTGTAAGTGAAGCAGTTGAGATTGAGAAAGAGTT 239 Query 132097 TATTACAGA-AGCTTTGCC--TTGCAATTTGATTGGGATGAA 132135 | | || || ||| ||||| |||| | ||||||| ||||| Sbjct 240 TTTGACTGATAGC-TTGCCAGTTGC--TATGATTGGAATGAA 278 >seq123671 Length=1854 Score = 102 bits (112), Expect = 2e-16 Identities = 170/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA 110745 |||| || ||| ||| ||| || || ||||||| ||| || | ||||| ||||| | Sbjct 1450 TTGTACCTATGCTAAAAGTGTTTGACAGTACTGCAAGATACGTTGACCAAGGCGGTAATA 1391 Query 110746 GAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || || ||| |||| | || | ||||| |||||| ||||||| |||||||| | Sbjct 1390 AAAGACCAGGATCAATTGCAGTTTACTTGGAACCATGGCATGCAGATATCTTTGAATTTT 1331 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 |||||||||| |||||| ||| || || || ||| || | ||| | |||| | Sbjct 1330 TAGAACTTCGAAAAAATACAGGTTTAGATGAGATGAGAACAAGAGATCTTTTTTTAGGTC 1271 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 | |||||| | || || || ||| || | || || | |||| |||||| ||| | | Sbjct 1270 TATGGATTCCTGACTTGTTTATGGAAAGAGTAGAAAAGGATGGACAGTGGTCACTTTTCT 1211 Query 110923 GTCCT 110927 ||||| Sbjct 1210 GTCCT 1206 >seq4840 Length=6511 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 167249 ACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 ||| |||||||| ||||| | | || |||||||||||||| |||| || || | || | Sbjct 2418 ACCCGCATTATCAAATTC-TCCACAATAATTTGGTGCTGAGAATAATGTGACAAGTTGGC 2476 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 | || ||| ||||||||||||||||| ||||||| ||| ||||| Sbjct 2477 GTTTAGCAAAAAATTCATAACCATCTTCGACAACTTGATGAGCACG 2522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183886245734060