Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq175891 136 3e-27 seq188148 129 4e-25 >seq175891 Length=10111 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | |||||||| |||||||| | ||| |||||||| || |||||||| || Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| |||| ||||||||||| || |||||||||||||| || |||||| | || Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| | || |||| || | || ||| | || || Sbjct 8424 ATTCCTTCCTTGTCTTGAATTTT-AGCTTTTACATTTTCAATAGTATCGGAAGGCTCAAC 8366 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || || || || |||||||| |||||| Sbjct 8365 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCATA 8317 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || ||| ||||| ||||| |||||||| Sbjct 9685 ACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGA 9626 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| ||||||||||| || || ||||||||||| || |||||| | || Sbjct 9625 CAAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 9566 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| || | |||| || | ||| ||| || || | Sbjct 9565 AATACCTTCTTTATCTTGGATTTT-TGCCTTGACATTTTCAATGGTATCGGATGGCTCAA 9507 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| || ||||| |||||| Sbjct 9506 CTTCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCATA 9457 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||||| || || |||||||| |||||||||||||| Sbjct 8317 ACCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGA 8258 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| ||||||||||| ||||||||||||||||| || |||||| | || Sbjct 8257 CAAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGG 8198 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || |||||| | | || | || | || || | ||| | Sbjct 8197 AATACCCTCCTTATCTTGAATTTT-AGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGA 8139 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || ||||| || || || ||||| ||||| Sbjct 8138 CCTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 Score = 114 bits (126), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 |||||| || || || || || |||||||| |||||||||||||| | ||| ||| | Sbjct 8761 ACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCC 8702 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||||||||| || || || || |||||||| |||||| | || | ||||||||| Sbjct 8701 ATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTT 8642 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||||| | || ||| | || | || || | ||| || || | || | Sbjct 8641 GTCTTGGATTTT-GGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAA 8583 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| || ||||| ||||| || || || ||||| Sbjct 8582 TTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCAT 8546 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | |||||| || || || || || |||||||| |||||||| || || Sbjct 9001 ACCACCACGGAGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGA 8942 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||||||||| || ||||| || ||||| || |||||| | || Sbjct 8941 CAATGTACGGCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGG 8882 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||||| | | || | || | ||| || || || | Sbjct 8881 AATACCTTCTTTGTCTTGGATTTT-AGCCTTGACGTTTTCAATGGTATCAGATGGCTCAA 8823 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || ||||| || |||||||| || |||||| Sbjct 8822 CTTCTAAGGTGATAGTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCATA 8773 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 9457 ACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGA 9398 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || ||||| || || ||||| ||||||||||| ||||||||| | || Sbjct 9397 CAAAGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGG 9338 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || |||||| | | |||| || | ||| || || || | Sbjct 9337 AATACCTTCTTTATCTTGAATTTT-AGCCTTGACATTTTCAATGGTATCAGATGGCTCTA 9279 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || || || || || ||||| |||||| Sbjct 9278 CTTCCAAGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATA 9229 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || || ||||| ||||| ||||| || Sbjct 9229 ACCACCACGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGA 9170 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| ||| | || ||||| || || ||||| ||||||||||| || || ||| | || Sbjct 9169 CAATGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGG 9110 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||||| | | |||| || | || || || || | Sbjct 9109 AATACCTTCCTTATCCTGGATTTT-AGCCTTTACATTCTCTATAGTATCAGATGGCTCTA 9051 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || || || ||||| |||||||| |||||| Sbjct 9050 CTTCCAAGGTGATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCATA 9001 >seq188148 Length=18106 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||||| |||| || ||||| |||||||| ||||| | || || | || ||| Sbjct 3631 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATCTTCC 3690 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| ||||| || |||||||| || |||||| | || | |||||||||||| Sbjct 3691 AATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGG 3750 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | ||||||| | || || || | || || ||||| Sbjct 3751 ATTTT-AGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTT 3809 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| ||||| || ||||||||||| Sbjct 3810 ACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327932989843200