Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq175891 120 7e-22 seq22680 105 2e-17 seq137448 100 7e-16 seq188148 91.5 3e-13 seq185055 89.7 1e-12 seq5262 86.0 1e-11 >seq175891 Length=10111 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| ||||| |||||||| || ||||| || | || Sbjct 9017 AAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCTGATACTATAGAGAAT 9076 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||| ||| || ||| ||| | | || ||| Sbjct 9077 GTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAACAACGTTTGATTTTC 9136 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||||||||||||||| | || ||| | ||||| ||| |||| || || ||| Sbjct 9137 GCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATAACATCCAAAAGGAATCT 9196 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| | |||||| | ||||| Sbjct 9197 ACCCTTCACTTGGTTTTGCGTCTTCG 9222 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || |||||||| || ||||| || | ||| || ||| Sbjct 9254 ACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCTGATACCATTGAAAATGTCAAGGCT 9313 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| |||||||| ||| || || ||| | | || |||||||| ||| Sbjct 9314 AAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTTTGATTTTCGCCGGTAAG 9373 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||| | |||||| ||||||| ||| |||| || || ||||| |||||| Sbjct 9374 CAGTTGGAAGATGGACGTACTTTGTCCGATTATAACATCCAAAAGGAATCTACCCTTCAC 9433 Query 206374 CTTGTTTTGAGACTTCG 206390 | |||||| | || || Sbjct 9434 TTGGTTTTGCGTCTCCG 9450 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || || || |||||||||||||| || || || || | ||| Sbjct 9472 CAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCCGATACCATTGAAAA 9531 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||| || ||||| |||||||| ||| || || ||| | | || || Sbjct 9532 TGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATTTT 9591 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || || || |||||||| ||| | |||||| ||||||| ||| |||| || ||||| Sbjct 9592 CGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAACATCCAAAAGGAGTC 9651 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||| | |||||| | || || Sbjct 9652 TACCCTTCACTTGGTTTTGCGTCTCCG 9678 Score = 104 bits (114), Expect = 6e-17 Identities = 147/201 (73%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || | || || ||| ||| || || | ||| Sbjct 8561 AAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCGGATACTATAGAAAAC 8620 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| ||| || ||||| |||||||| ||| || || |||| || || || Sbjct 8621 GTTAAAGCCAAA-ATCCAAGACAAAGAAGGTATTCCCCCAGA---TCAACAGCGTTTAAT 8676 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||||| || || || |||||||||||| | || ||| ||||||||||| |||| ||||| Sbjct 8677 CTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATCCAAAAAGA 8736 Query 206361 GTCTACTCTTCACCTTGTTTT 206381 ||||| |||||| | || || Sbjct 8737 ATCTACCCTTCACTTAGTATT 8757 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | |||||| | |||||| ||||| || || |||| ||||| |||| ||| || Sbjct 9222 CGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTA 9163 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||| |||||||| || | |||||||| Sbjct 9162 CGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTG 9119 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| || || || ||| |||||| || | || || ||| Sbjct 8114 ACTGGCAAGACCATCACCTTAGAGGTCGAACCTTCTGATACTATTGAGAACGTCAAGGCT 8173 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || || || ||| || || ||| | | || || ||||| || Sbjct 8174 AAAATTCAAGATAAGGAGGGTATTCCCCCAGATCAACAACGTTTGATTTTTGCCGGTAAA 8233 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| ||| | |||||| ||||||||||| | || ||||| ||||| ||||| Sbjct 8234 CAATTGGAAGACGGACGCACTTTGTCCGATTACAACATTCAAAAAGAATCTACACTTCAT 8293 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 8294 TTGGTTCTACGTCTTCG 8310 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || | || || || || ||||| || ||||| || ||||| || | Sbjct 8782 TTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCTGATACCAT 8841 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| || || ||||| |||||||| ||| || || ||| | | Sbjct 8842 TGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAACGTTT 8901 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || || || || ||||||||||| | || ||| | || |||||| |||| || Sbjct 8902 AATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAACATCCAAAA 8961 Query 206358 AGAGTCTACTCTTCACCTTGTTTT 206381 ||| ||||| |||||| | || || Sbjct 8962 AGAATCTACCCTTCACTTAGTATT 8985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | |||||| | |||||| ||||| || || |||| ||||| || | |||||| Sbjct 9450 CGGAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTA 9391 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| |||||| |||||||| || | ||||| ||| Sbjct 9390 CGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGA 9346 >seq22680 Length=2395 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || |||||||| || || | ||||| || ||||| | ||| Sbjct 998 CAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCACAGAC 939 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| ||||| |||||| ||||| ||||||||||| || ||| ||| Sbjct 938 ACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAACAA 879 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || ||||| || || ||| | || ||||||||||| | ||| |||||| || Sbjct 878 AGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTACAACATC 819 Query 206353 CAGAAAGA 206360 || || || Sbjct 818 CAAAAGGA 811 >seq137448 Length=735 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| ||||| ||||| || || || |||||||| ||| | ||| Sbjct 252 CAAATCTTTGTCAAAACACTCACGGGAAAGACAATTACATTGGAAGTTGAAGGGGGTGAT 193 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || |||||| || || || || |||||||| || || ||| ||| Sbjct 192 ACAATTGAGAATGTAAAGGCGAAAATACAGGACAAAGAAGGGATACCTCCTGACCAGCAA 133 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || || |||||| | || ||||||||||| || || || || | Sbjct 132 AGATTGATATTTGCAGGGAAGCAGCTTGAGGATGGAAGGACATTAAATGACTATAATATA 73 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||| |||| | || ||||| |||||||| Sbjct 72 CAGAAGGAGAGTACTTTACATCTTGTGTTGAGACT 38 >seq188148 Length=18106 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| | || || ||||| || || |||||||| || ||| ||| Sbjct 3836 CAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCCGAC 3777 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || || ||||| |||||||| || || || ||| Sbjct 3776 ACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAA 3717 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||||||||| || || ||||||||||| | || ||| |||| |||||| || Sbjct 3716 CGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAACATC 3657 Query 206353 CAGAAAGAGTCTACT 206367 || || || || ||| Sbjct 3656 CAAAAGGAATCCACT 3642 >seq185055 Length=12631 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| |||||||||||||| ||| || || || | ||| || ||| Sbjct 12628 ACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAGGCT 12569 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| |||||||| ||| || || ||| | | |||||||| || || Sbjct 12568 AAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGCAAA 12509 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || || || ||||| | ||| || | || |||||| |||| || || |||||||| || Sbjct 12508 CAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTCCA 12450 >seq5262 Length=11329 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| || || || || || ||||| | || || ||| |||||| Sbjct 3375 CAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTCTGAT 3316 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || |||||| || ||||| |||||| || || || Sbjct 3315 ACCATTGAAAATGTTAAAGCCAA-GATTCAGGACAAAGAGGGAATTCCACCAGATCAGCA 3257 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || ||||| |||||||||||||| | ||| | | || ||||| | Sbjct 3256 ACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAATAT 3197 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || | ||| | |||||| | ||||| Sbjct 3196 TCAAAAGGAATCGACATTGCACTTGGTTTTGCGTCTTCG 3158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178906555475660