Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq188148 125 7e-24 seq173136 120 3e-22 seq175891 105 6e-18 seq5262 86.0 6e-12 >seq188148 Length=18106 Score = 125 bits (138), Expect = 7e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||||| | || || ||||| |||||||||||| || ||| Sbjct 3618 ACGAAGGCGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 3677 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| | |||||||||| |||| | ||| ||||||||||| || || || Sbjct 3678 ACGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACC 3737 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||||| || | | ||| | || |||| ||||| ||||| | Sbjct 3738 TTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAA 3797 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||| | |||||| | ||| |||||||| Sbjct 3798 GGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq173136 Length=30018 Score = 120 bits (132), Expect = 3e-22 Identities = 779/1236 (63%), Gaps = 41/1236 (3%) Strand=Plus/Minus Query 146551 ACAGTGAATTGTTGTGTGTGCGCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTG 146610 ||||| |||||| | | || || |||||||| | ||||| |||||||| || || Sbjct 3878 ACAGTAAATTGTATAGCATTGGCGGCTGGTTTTGTTCTTAAATAGTACATGCCGGTCTTT 3819 Query 146611 AGGCCACATCGCCACGAGTGATTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCC 146670 | |||| ||| || | || || || || | | |||| | || || || Sbjct 3818 AAGCCAGCCTTCCAAGAATAGAAATGTATAGAGGTTAATTTACCGTAATTAGGTTCAGCT 3759 Query 146671 ACGAAAAGATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCA 146730 ||| | ||||| ||||| |||||||||||||||||| || ||||| ||||| | | Sbjct 3758 ACGTGTATGTTAAAGGATTGACTTTGATCTATGAAAGCGCCACGATCGGCGGCCATTTTA 3699 Query 146731 ATCATGCGTTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGG 146789 || ||| | ||| | | |||||||| | || || || || | || | | || Sbjct 3698 ATTGTGC-TCTTGACGGAAATTTCCCAAACTGTCTTATAAAGGTCACGAATATTTTTGGG 3640 Query 146790 AATACCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTT--CGTATT-TC 146846 ||| |||| ||| ||| ||||| || | | | ||| | ||| | |||| || Sbjct 3639 AATTTCTTCTATGGCTTGTATAGATCCGCGATTGGATATAATTTTATTTTTCATATTATC 3580 Query 146847 GGGCGTGTAA--AGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGA 146904 | || | ||| ||| ||| ||||| |||| ||||| || || | Sbjct 3579 ATCCCACAAATCAAGTTCTGTTAAATCTT----TCAAT-AAATGATGATTAACAACATTG 3525 Query 146905 AACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCA 146964 || || || | |||||||||| | ||| | || ||| |||| ||||| || ||| Sbjct 3524 AATTCTCCTGATAGCACACGTCGGGTATATATGTTAGAAGTATAAGGTTCAAATGATTCA 3465 Query 146965 TTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTT 147024 |||||||| || || || || || | ||| ||||||||| || | | ||| || || Sbjct 3464 TTATTGCCCAAAATCTGAGCGGTAGATGCTGTAGGCATGGGAGCAATAAGCAAAGAGTTA 3405 Query 147025 CGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGC 147084 || | ||| | ||| || || || || | ||| ||||||| | || Sbjct 3404 CGTACACCATGTTGCTTGATTTTTTCTTTTAATGCCGACCAATCCCACAAGTCAGTAGGT 3345 Query 147085 GTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTA 147144 || |||||||| || || || || | |||| || | |||| ||| | | || Sbjct 3344 GTTTTATTCCACATATCATATTGTAGTATTCCTTTGCTAACTGGACAGCCGGGATAGGTT 3285 Query 147145 GTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATG 147204 || | || | | ||||||||||| || ||||| | || ||||| || ||| Sbjct 3284 TCATATGTACCATATTTTTCTGCCAATTCACAACTGGCCTCTAAGGCACCATAATAAATG 3225 Query 147205 GTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGA 147264 ||||| ||||||| ||| | | || | ||| ||||| || || | |||| Sbjct 3224 GTTTCAAATATTTGTTGGTTCAATAAAAAGGCCTGTTCACTCTCATAGGGGAAGCGCATT 3165 Query 147265 AGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTT----TTC 147320 | | || | ||| || |||||||||| ||| | || || || ||||| || Sbjct 3164 AAAATCAAAGTATCAGCAAAACCCTGGACACCTATACCAATGGGGCGATGACGCAGATTA 3105 Query 147321 G-TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGT 147379 | || || || || || | |||||| | || || ||||| || || | | Sbjct 3104 GATTTCTTTGCCTCTGGC-----AGGGGATAATAATTTATGTCTATAATTTTATTTAAAT 3050 Query 147380 TACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA 147439 | | | ||||||||| | |||| | ||||| || || | || ||| Sbjct 3049 TCCTGGTAATAACTTTAGTAACATTTTTCAATTTCTTAAAGTCGAATGTTT--TCT---- 2996 Query 147440 CACGT---ACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGG 147496 || || || | || | || || || |||| ||| || ||||| | || |||| Sbjct 2995 CAGGTGTAACAAACATATTAAGCGCAATGGAGGCCAAATTACAAACGGCTATTTCATCGG 2936 Query 147497 CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTT 147556 | | || | || ||||| | ||||||||||||||||| || || | ||||| Sbjct 2935 GGGCAGAATATTCTACAATTTCTGTACACAGGTTGCTGCATTTAATAGTGCCTATATTTT 2876 Query 147557 GCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGA 147616 |||| || || || ||||| || || || ||| | | |||||| ||| || || || | Sbjct 2875 GCTGGTTACTCTTGCGATTACAGGCATCCTTGTATAACATGTAGGGTGTACCAGTTTCTA 2816 Query 147617 CTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGC 147673 |||| | |||| ||| ||||| || || |||| || | | | | ||| |||| Sbjct 2815 CTTGGGCCTCAATGATGGCAAACC-AT--AGAGCCTGTGC-CTTAACAG-TGCGATTAGC 2761 Query 147674 --GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGC 147731 ||| || ||||| ||| |||||| | |||||||| || || || ||| Sbjct 2760 TTTGCCTTCTTTTTCATACTTGGTATACAACTGTTCAAACTCTTCACCCCAGACATCCTG 2701 Query 147732 AAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 ||||||||||| | ||| |||||||| | ||||| Sbjct 2700 CAGGCCGGGACATTTATGGGGACACATTAAGGACCA 2665 >seq175891 Length=10111 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| |||||||| ||| || ||||| | Sbjct 8760 CGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCA 8701 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | |||||| ||||||||||||||| || || |||||||| Sbjct 8700 TCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 8641 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | |||||| | || || || || | || | Sbjct 8640 TCTTGGATTTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATT 8581 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || | ||||| | |||||| |||||| Sbjct 8580 GTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | | ||||| ||||| ||||| || ||| || || || Sbjct 9672 CGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCG 9613 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | || | ||| |||||||||||||| || ||||||||| Sbjct 9612 TCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTA 9553 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||||||| ||||| ||||| | || | Sbjct 9552 TCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATA 9493 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| ||||| | ||| || ||||| Sbjct 9492 GTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || || || | | | || |||||||| ||||||||||| || ||||| | Sbjct 8988 CGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAGTCCGACAATGTACGGCCA 8929 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | |||||| ||| ||||||||||| || || |||||||| Sbjct 8928 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCTTTG 8869 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | ||| | ||||| | ||||| ||||| | || | Sbjct 8868 TCTTGGATTTTAGCCTTGACGTTTTCAATGGTATCAGATGGCTCAACTTCTAAGGTGATA 8809 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || | ||| |||| ||||| ||||| Sbjct 8808 GTCTTGCCGGTTAAAGTCTTTACAAAAATTTGCAT 8774 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | | || || ||||| ||||| || ||| || ||||| | Sbjct 9444 CGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCA 9385 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| ||||||| | || | ||| || ||||||||||| || ||||||||| Sbjct 9384 TCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTA 9325 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | ||||| | ||||| ||||| | || | Sbjct 9324 TCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATG 9265 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| || || | ||| || ||||| Sbjct 9264 GTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || || |||||||| | | || ||||||||||| ||||| || || || Sbjct 8539 ACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGACAATGT 8480 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||||| | ||||| || | | | || | ||| ||||||||||| || || || Sbjct 8479 GCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCC 8420 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || |||||| ||| | | ||| | |||||||| ||||| || || | Sbjct 8419 TTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAACCTCCAA 8360 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | || || ||||| Sbjct 8359 AGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | | || || ||||| ||||| || || || ||||| | Sbjct 9216 CGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCA 9157 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||| ||||||| | || | ||| ||||| ||||| || || ||||| ||| Sbjct 9156 TCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTA 9097 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| || | | || | |||||| | ||||| ||||| | || | Sbjct 9096 TCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATA 9037 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| ||||| | || || ||||| Sbjct 9036 GTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | || ||||||||||||||||| ||| || || || ||||| Sbjct 8299 AACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTC 8240 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | | || | ||| ||||||||||| || || || || ||||| Sbjct 8239 CAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCTTG 8180 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | || | |||||| | || || || || | || | || || Sbjct 8179 AATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTCTT 8120 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| | || || | ||| || ||||| Sbjct 8119 GCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 >seq5262 Length=11329 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | || || |||||||| |||||||| | ||||| | Sbjct 3164 CGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAAAGAGTACGACCA 3223 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||| || | | | |||| ||| || |||||||| || || || ||||| Sbjct 3224 TCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCTTTG 3283 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||| | | ||| | ||||| | || || || || | || | Sbjct 3284 TCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGACCTCAAGTGTGATG 3343 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||| || || ||||| | || |||||||| Sbjct 3344 GTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475464592605600