Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq173136 138 1e-27 seq175891 104 2e-17 >seq173136 Length=30018 Score = 138 bits (152), Expect = 1e-27 Identities = 921/1451 (63%), Gaps = 51/1451 (4%) Strand=Plus/Minus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 || || ||||| || | ||| ||||| ||||| ||||| | |||||||||||| |||||| Sbjct 3878 ACAGTAAATTGTATAGCATTGGCGGCTGGTTTTGTTCTTAAATAGTACATGCCGGTCTTT 3819 Query 136699 AAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTA---TAGCTCGGATCG 136755 || || || ||| ||||| ||||||||| | || |||| || | || || Sbjct 3818 AAGCCAGCCTTCCAAGAATAGAAATGTATAGAGGTTAA---TTTACCGTAATTAGGTTCA 3762 Query 136756 GCCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATG 136815 || ||| | || | ||||| || ||||| ||| ||| || || || |||||||| Sbjct 3761 GCTACGTGTATGTTAAAGGATTGACTTTGATCTATGAAAGCGCCACGATCGGCGGCCAT- 3703 Query 136816 TTCAATAGTACTTTTTGC-TTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGG 136874 || ||| || || || | |||||||||| | || ||| | || || | ||| Sbjct 3702 TTTAATTGTGCTCTTGACGGAAATTTCCCAAACTGTCTTATAAAGGTCACGAATATTTTT 3643 Query 136875 CGGAATTTCATCGATATTCTGTACAGATCCG---TTGTTTTTGATGATTTTCATCATGAG 136931 |||||||| || || |||| ||||||| ||| | | || | || |||| Sbjct 3642 GGGAATTTCTTCTATGGCTTGTATAGATCCGCGATTGGATATAATTTTATTTTTCATATT 3583 Query 136932 ATCAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTAC-TT 136990 |||| || | | | ||| | | | | | || | | ||| ||||| || || || Sbjct 3582 ATCA-TCCCACAAATCAAGTTCTGT-TAAATCTTTC-AATAAATGATGATTAACAACATT 3526 Query 136991 GATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATT 137050 || |||| || |||||||| | || || | ||| ||| | || || || |||| Sbjct 3525 GA-ATTCTCCTGATAGCACACGTCGGGTATATATGTTAGAAGTATAAGGTTCAAATGATT 3467 Query 137051 CGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAAT 137110 | || || ||||||||||| || || | ||||| |||||| ||| || | ||| || | Sbjct 3466 CATTATTGCCCAAAATCTGAGCGGTAGATGCTGTAGGCATGGGAGCAATAAGCAAAGAGT 3407 Query 137111 TCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAGTTCCACAGATTGTTCG 137170 | |||| ||| ||| | || || || | | ||| | ||||| || | Sbjct 3406 TACGTACACCATGTTGCTTGATTTTTTCTTTTAATGCCGACCAATCCCACA---AGTCAG 3350 Query 137171 ATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCAT 137230 | ||| ||||||||| |||| | || | | ||| || | |||| | | || Sbjct 3349 TAGGTGTTTTATTCCACATATCATATTGTAGTATTCCTTTGCTAACTGGACAGCCGGGAT 3290 Query 137231 AAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCATAGT 137290 | | |||||||| || | || |||| |||| ||| ||| || ||||| | Sbjct 3289 AGGTTTCATATGTACCATATTTTTCTGCCAATTCACAACTGGCCTCTAAGGCACCATAAT 3230 Query 137291 AAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATAT 137350 |||| ||||| | |||| | |||||| || | || || || ||||| | Sbjct 3229 AAATGGTTTCAAATATTTGTTGGTTCAATAAAAAGGCCTGTTCACTCTCATAGGGGAAGC 3170 Query 137351 CCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAA 137410 || || | |||| ||| |||| || || | ||| ||||| || || | || | Sbjct 3169 GCATTAAAATCAAAGTATCAGCAAAACCCTGGACACCTATACCAATGGGGCGATGACGCA 3110 Query 137411 AATTTGATAT-TTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGA 137469 ||| ||| | || | || | || |||||| | ||| |||||||||| |||| | | Sbjct 3109 GATTAGATTTCTTTGCCTCTGGC-AGGGGATAATAATTTATGTCTATAATTTTATTTAAA 3051 Query 137470 TTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTC--GAAATCGAAGCTTTTAGACT 137527 || | |||| ||| | | || || | | | ||| || ||||| |||| || Sbjct 3050 TTCCTGGTAATAACTTTAGTAACATTTTTCA--ATTTCTTAAAGTCGAATGTTTT---CT 2996 Query 137528 GTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTCTGTAT 137587 || |||| |||| | ||||| ||||| || || || ||||| |||| || Sbjct 2995 CAGGTGTAACAAACATATTAAGCGCAATGGAGGCCAAATTACAAACGGCTATTTC---AT 2939 Query 137588 -TGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAAT 137644 | || | |||| ||||||||| | || || |||||| | || | | || | Sbjct 2938 CGGGGGCAGAATATTCTACAATTTCTGTACACAGGTTGCTGCATTTAAT-AGTGCCTA-- 2882 Query 137645 TCTTTTGATTGTTTTTCT--CGTTGAC-GTGATCTTTATATATCATATACGGAGTTCCGG 137701 | ||||| | ||| ||| || | || | ||| || |||| ||| || || || || | Sbjct 2881 TATTTTGCTGGTTACTCTTGCGATTACAGGCATCCTTGTATAACATGTAGGGTGTACCAG 2822 Query 137702 TTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACGCCATAATTTGTTCTCTAA 137761 |||| ||||| | ||||| || ||| || ||| ||| || | | | Sbjct 2821 TTTCTACTTGGGCCTCAATGATGGCAAACCATAGAGCCTGTGCCTTAA-CAGTGCGATTA 2763 Query 137762 AC-TTGCCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAAATTTTTCGCCCATAACAA 137818 | ||||||| |||| | || |||| | | ||| ||| | ||| ||| ||| Sbjct 2762 GCTTTGCCTTCTTTTTCATA--CTTGGTATACAACTGTTCAAACTCTTCACCCCAGACAT 2705 Query 137819 TCGTTAGACCCGGACACTCGTCGGGACACATCAACGACCATTTTCC-TCCCGTCCTAACC 137877 | || || ||||| | | ||||||||| || ||||| | || | | || || Sbjct 2704 CCTGCAGGCCGGGACATTTATGGGGACACATTAAGGACCAGTCACCGTTTTCTTCT-ACT 2646 Query 137878 CTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGCCTTCATATCT 137937 |||| ||| |||| || |||||| |||| ||| ||| || | ||| | ||| Sbjct 2645 CTTTTCATAAACAAGTCGGGAATCCATAAAGCATAAAAAAGATCTCTAGCTCTGTGCTCT 2586 Query 137938 TCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCG 137997 || || |||| |||||||| ||||| ||||||||| | ||||||||| || Sbjct 2585 TCTTTACCAGTATTTTTCTTTAAATCTAAAAATTCAAAAATATCTGAATGCCAAGGTTCC 2526 Query 137998 ATATAGACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACATGACGCAACATA 138054 | ||| | || | ||||| | ||| ||| ||||| || |||| ||| || | Sbjct 2525 AAATAAATAGCAAAGGCTCCAGGACGTTTGCCACCACCTTGGTCTACATAACGGGCCACA 2466 Query 138055 CTATTAAAGAC 138065 ||||||| || Sbjct 2465 TTATTAAACAC 2455 >seq175891 Length=10111 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || || || || ||||| || || | ||||| | || |||||| | Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||||||| ||| | || || |||||| ||||| |||||||| || || ||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 || ||| | | |||| | ||| |||||| | ||||| | | | | | ||||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || |||||||||||||| || ||||||| || Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGT 8298 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || ||||| || || ||| | ||||| | || || || | | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| |||||| || || || || || || || ||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | |||| | ||||||||| | ||||| | | | |||| | |||||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTG--ATTACA 8495 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||||||||||||||||| | ||||| || ||| Sbjct 8496 ATATTCAAAAAGAATCCACATTGCATTTGGTATTA 8530 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| ||||| |||||| | || || | || || ||| | Sbjct 8545 CATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTC 8604 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 8605 GGATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 8664 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || | | || | || || |||||| | ||||||| | | |||| ||||||| Sbjct 8665 ACAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTC--CGATTAC 8722 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || || ||||||||||| ||| |||| ||||| ||| Sbjct 8723 AACATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| || |||||||| || | ||||| | ||||| || |||| | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGA-GCCATC 8832 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||||| || ||||| ||||| || || ||||| Sbjct 8833 TGATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCA 8892 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | | || | | || |||||| | ||||||| | | |||| | | ||| Sbjct 8893 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGG--ACTAC 8950 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 || || ||||||||||| ||| |||| ||||| ||| Sbjct 8951 AACATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444023614147200