Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq175891 107 2e-18 seq137448 105 6e-18 seq188148 98.7 9e-16 seq5262 98.7 9e-16 seq150344 89.7 5e-13 >seq175891 Length=10111 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | || |||||||| || || || |||||||| |||||||| | | Sbjct 8544 CCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTTTTGAATATTGTAATCAGAC 8485 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| |||| |||| || || || ||||| ||||| || || || || | || Sbjct 8484 AATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAAACGTTGTTGATCTGGGGGG 8425 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| ||| || || | | || | | || ||| | || || Sbjct 8424 ATTCCTTCCTTGT-CTTGAATTTTAGCTTTTACATTTTCAATAGTATCGGAAGGCTCAAC 8366 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 8365 CTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 8318 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | ||| |||||||| ||||| ||||| | | Sbjct 9228 CCACCACGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGAC 9169 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||||||| || || ||||| || || ||||| | ||| Sbjct 9168 AATGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGA 9109 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||| || ||| | | | | | || || | || || Sbjct 9108 ATACCTTCCTTATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACT 9049 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 9048 TCCAAGGTGATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | ||| || ||||||||||||||||||| | Sbjct 8316 CCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAC 8257 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || |||| |||| || ||||| ||||| ||||| || || || || | ||| Sbjct 8256 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 8197 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||| | | ||| ||| | ||| | | | | || || | ||| || Sbjct 8196 ATACCCTCCTTAT-CTTGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGAC 8138 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| | ||||| || || || || || || ||||| || || |||||| Sbjct 8137 CTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATT 8089 >seq137448 Length=735 Score = 105 bits (116), Expect = 6e-18 Identities = 177/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 35485 TTTTTATACAATCATCTCTTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTAC 35543 ||||||||||| |||| |||||| ||||| | | |||||||| | |||||| |||| Sbjct 5 TTTTTATACAACAATCT--TTATTTACCACCTCTCAGTCTCAACACAAGATGTAAAGTAC 62 Query 35544 TCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 ||||||| || || || || || || || | | || || |||||||| || |||| Sbjct 63 TCTCCTTCTGTATATTATAGTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAA 122 Query 35604 ATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 ||||||| | |||||||| | ||| | | || |||||| || || ||| | | Sbjct 123 ATATCAATCTTTGCTGGTCAGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACAT 182 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | | ||| || |||| || || || || ||||| | ||||| | Sbjct 183 TCTCAATTGTATCACCCCCTTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGA 242 Query 35724 CAAATATCTGCATT 35737 |||| || |||||| Sbjct 243 CAAAGATTTGCATT 256 >seq188148 Length=18106 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||||| || |||||||| |||||||| |||| | Sbjct 3613 CCACCACGAAGGCGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 3672 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| || ||||| || || ||||| || || || || | || Sbjct 3673 AAGGTACGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGG 3732 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || ||||| ||| || ||| | | || | | |||||| | || || Sbjct 3733 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACT 3792 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| || |||||||| || || |||||||| Sbjct 3793 TCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq5262 Length=11329 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | ||| ||||| || || || ||||||||||| ||||| || | Sbjct 3151 TCCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGA 3210 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || || | || |||| ||| || || ||||| || || || ||||| || | || Sbjct 3211 AAGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGG 3270 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||| |||||| ||||| || | | || | | || || | ||| || Sbjct 3271 AATTCCCTCTTTGTCCTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGAC 3330 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||| | ||||| || |||||||| | ||||| ||||||||||||||| Sbjct 3331 CTCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCATT 3379 >seq150344 Length=698 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 35485 TTTTTATACAATCATCTCTTTATTT-CCACCACGTAACCTCAACACCAAATGTAACGTAC 35543 ||||||||||| |||| |||||| ||||| | | ||||| || | |||||| |||| Sbjct 543 TTTTTATACAACAATCT--TTATTTACCACCTCTCAGTCTCAATACAAGATGTAAGGTAC 600 Query 35544 TCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAA 35603 ||||||| || || || || || || || || | || || |||||||| || |||| Sbjct 601 TCTCCTTCTGTATATTATAGTCATTTAATGTCCGTCCATCTTCAAGCTGCTTTCCTGCAA 660 Query 35604 ATATCAACCGCTGCTGGTCCGAAGG 35628 ||||||| | |||||||| | ||| Sbjct 661 ATATCAATCTTTGCTGGTCAGGAGG 685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449709103296800