Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq172082 217 1e-51 seq191290 188 6e-43 seq172821 183 2e-41 >seq172082 Length=56793 Score = 217 bits (240), Expect = 1e-51 Identities = 431/629 (69%), Gaps = 18/629 (3%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 |||||||| || ||| |||| || ||||| || ||| || ||||| ||||||||| Sbjct 15294 CATTTTATTTCACACGTTCTGGCATTCTTTGCCGCTTCCGATGGTATAGTTAATGAAAAT 15235 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 | ||| || || | ||||| || ||| || |||| || || ||||| ||||| || Sbjct 15234 CTTGTTGAACGTTTCTCCCAAGAGGTGCAAGTAACAGAGGCTCGTTGTTTCTATGGTTTC 15175 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| |||||| | || || |||||||| ||| || | || || || ||||| Sbjct 15174 CAAATTGCCATGGAAAATGTACACTCCGAAATGTATAGTATTTTAATTGACACTTACATT 15115 Query 44015 AAAGATGG----GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGAT 44070 || ||| | ||||||| ||| | |||||||| || ||||| | || || | Sbjct 15114 AAGGATCGTGATCAACGAGAA-TATC---TATTTAATGCTATTGAAACTATGCCAGCTGT 15059 Query 44071 TAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAAAT--GATTCTTTTGGAGA 44127 ||| | ||| || || |||||| | |||| | || |||| | | |||||| || Sbjct 15058 TAAGCGTAAGGCCGATTGGGCCATGTCTTGGATTTCATCTAAATCGGCTAATTTTGGTGA 14999 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG-GATCG-TTTGCGGCC 44185 || || | || ||||| | ||| || || |||||| ||||| | | | ||||| | Sbjct 14998 GCGTATTATTGCATTTGCTGCTGTCGAGGGTATTTTC--TTCAGTGGTAGTTTTGCTTCG 14941 Query 44186 ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATA 44245 ||||||||| | |||||||| ||| | |||||||| | || || || ||||| || || Sbjct 14940 ATATTTTGGCTCAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTCCAATGAATTGATC 14881 Query 44246 AGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGAC 44305 |||||||| || |||||||| ||||||||| || | || | || | | | | Sbjct 14880 TCACGTGATGAGGGTTTACATTGTGATTTTGCTGTTTTAATGTTTAAACATTTGGTACAA 14821 Query 44306 GATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAA 44365 | ||| | | | ||||| || || || ||||| ||||| || ||||| Sbjct 14820 CGT---CCTAGTAGGGATAGAATTATTGAAATCATTTCGGAGGCGGTAAAAATTGAACAG 14764 Query 44366 GAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAAC 44425 ||||| | ||| || |||| |||||||| || || |||||| |||||| Sbjct 14763 GAATTCTTAACAGATGCTCTACCCGTAAATTTGATTGGTATGAATTGTAAATTGATGTCG 14704 Query 44426 CAATATATTGAATACATTGCAGATCGTTT 44454 |||||||||| | | || |||||||| Sbjct 14703 GAATATATTGAGTTTGTGGCCGATCGTTT 14675 >seq191290 Length=35329 Score = 188 bits (208), Expect = 6e-43 Identities = 482/726 (66%), Gaps = 6/726 (1%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATT-GCAGAAGAACTGTTATG 40750 ||||| ||| |||| |||||| | | |||||| |||| | || || || || || || Sbjct 6690 TTTCCTTTGTTAACCACAAAACGAGTATTTTGGCG-GGCAGTAGCTGAGGAGCTTTTGTG 6748 Query 40751 GTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810 |||| | | ||||| ||| |||| || | ||| ||| | | | || |||||| | Sbjct 6749 GTTTGTACATGGTTGCACTGATGCCAAAATATTGCAAGAGAAAAATATACATATTTGGGA 6808 Query 40811 TGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870 || | ||| | | || |||| || |||| || || | || ||||| || Sbjct 6809 TGGTAATAGTGATCGTAAATTTTTGGATAAATTAGGTTTCACCGAACGTGAAGAAGGAGA 6868 Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930 | | ||||| || ||||| ||||| | ||| |||||||| || |||||| ||| ||||| Sbjct 6869 TTTGGGTCCGGTGTATGGTTTTCAATGGCGTCATTTTGGTGCCAAATATCGCAC-ATGTA 6927 Query 40931 CTC-TGATTATACCAATAAAGGAATGGATCAATT-ACAGTGCGTTATAGATACGATTAAA 40988 | ||| || |||||| |||| | |||||||| | || | || || |||| || Sbjct 6928 ATGATGACTACACCAATGAAGGTGTCGATCAATTGAAAGAG-GTCATTAATACCATACGC 6986 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 | ||||| || |||| ||||| ||| || ||||| || || ||| Sbjct 6987 ACTAATCCCAATGATAGACGCATAATTATGTCAGCTTGGAATCCTGTTGATATACCACAA 7046 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| |||||||||||||| | || || || || ||| ||||||||| | || Sbjct 7047 ATGGCTTTGCCACCTTGTCACTGTTTGGCACAATTCTATGTTGCTAATGGTGAATTATCT 7106 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| | |||||| | | ||| ||||| || || || || ||||| ||||| | Sbjct 7107 TGTCAGCTATATCAACGTAGTGCTGATATGGGTCTTGGTGTACCATTTAATATAGCTTCT 7166 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTT 41228 |||||| | || || ||||||||||| || | || | | | ||| || || ||| || Sbjct 7167 TATGCTTTACTAACCTATATGATTGCTCATATAACTGACCTGAGACCAGGAGATTTTATT 7226 Query 41229 CACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTG 41288 || || || ||| |||| |||| | ||||| || || || |||| || || || Sbjct 7227 CATACCACTGGTGATACACATGTTTATAAGAATCATATTGAACCTTTAAAGGAGCAGCTA 7286 Query 41289 ACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGAT 41348 | ||| ||||| | || ||||| | | |||| || | || ||| | || ||| Sbjct 7287 AAACGGAAACCACGCCCCTTTCCTAAATTGGTTATAAAGAGAAAAGTCGAAGATATAGAT 7346 Query 41349 GATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATG 41408 ||||| | || ||||||| || |||||| || || || || ||||| | ||| Sbjct 7347 GATTTCAAATTTGAAGATTTTGAAATTGTCGATTATAAACCTTATCCAAAAATTGAAATG 7406 Query 41409 GACATG 41414 | ||| Sbjct 7407 CAAATG 7412 >seq172821 Length=17278 Score = 183 bits (202), Expect = 2e-41 Identities = 276/387 (71%), Gaps = 14/387 (4%) Strand=Plus/Plus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---TGTA 19608 |||||||| || | |||||| | || || || || || ||| | ||||||| || Sbjct 3919 CACATTATCATCTTTGATGAAATCGATGCTATTTGCAAACAACGTGGTTCTGTGGCTGGC 3978 Query 19609 AA---TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 || ||| || ||||| || ||||| |||||| | | | ||| | || ||||| | Sbjct 3979 AACAGTGGTGTTCATGATACCGTTGTTAATCAATTGTTAGCCAAAATCGATGGTGTAGAA 4038 Query 19666 CAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCC 19725 || ||||||| |||||||||||||| ||||| ||| ||| || | || || |||| Sbjct 4039 CAGTTGAATAACATTTTAGTTATTGGTATGACAAATCGACGTGATATGATTGATGACGCC 4098 Query 19726 TTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGA 19785 ||| |||| |||||||| |||||| || | || ||||||| |||||| ||||| || Sbjct 4099 TTACTACGTCCCGGTCGTTTGGAAGTACAAATGGAAATTAGTTTACCCAATGAACAGGGT 4158 Query 19786 CGTGTGGAAATTTTAAACATACATACATCAAC-CATGCGACAA---AATAACCTTTTAAA 19841 |||||| ||||||| || || ||||| | ||| ||||| || ||||| || Sbjct 4159 CGTGTGCAAATTTTGAATATTCATAC-TAAACGAATGCGTGAATTTAATAAAATT---GC 4214 Query 19842 TGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACT 19901 | | ||||||||| |||||||||| || ||| ||||||| |||||| || ||| | Sbjct 4215 TCAAGATGTAGATTGCAAAGAAATTGCTGCTCTTACTAAAAACTTTAGCGGTGCTGAATT 4274 Query 19902 TGAGGGATTAGTGAGGGCCGCCCAATC 19928 || || || || | |||||||| || Sbjct 4275 GGAAGGTTTGGTACGTGCCGCCCAGTC 4301 Score = 141 bits (156), Expect = 7e-29 Identities = 202/283 (71%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || || ||| || || || || ||| | |||||||||| |||||||| Sbjct 3543 AATTGGCGGTTTAGATAAGGAATTCAATGCCATTTTTAGAAGAGCATTTGCTTCGCGTGT 3602 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| || | || | | ||||||| || || ||||| || || |||| | || Sbjct 3603 TTTCCCTCCTGAGTTGGTGGAACAATTAGGTTGCAAACACGTCAAAGGTATTTTATTATA 3662 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTAC 19418 ||| ||||| ||| ||| ||||| ||||| || || || || |||| ||| | | Sbjct 3663 TGGTCCACCCGGTACTGGTAAAACTTTAATGGCTCGACAAATTGGTAATATGTTAAATGC 3722 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | ||||| || ||||| ||||||||| |||| || |||||||||||||| |||| Sbjct 3723 CAGGGAACCT---AAGATTGTTAATGGTCCTCAAATTTTGGATAAATATGTAGGTGAATC 3779 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAA 19521 |||| ||| | |||||||||||||||| ||||| |||||| Sbjct 3780 AGAAGCCAATATTAGACGTTTGTTTGCTGAAGCTGAGGAAGAA 3822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396523724722300