Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq173136 147 3e-30 seq172082 96.9 4e-15 seq123671 95.1 2e-14 seq172236 86.0 8e-12 >seq173136 Length=30018 Score = 147 bits (162), Expect = 3e-30 Identities = 455/695 (65%), Gaps = 27/695 (4%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| | || || |||||||| |||||||||| ||||| || || ||||| || Sbjct 3497 TATATGTTAGAAGTATAAGGTTCAAATGATTCATTATTGCCCAAAATCTGAGCGGTAGAT 3438 Query 110768 GCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||||| ||||| || || || | ||||| |||||| | ||| | | |||||| || Sbjct 3437 GCTGTAGGCATGGGAGCAATAAGCAAAGA--GTTACGTACACCATGTTGCTTGATTTTTT 3380 Query 110826 CCTTGA-----GAACA-TCCCAGTCGT-AGTTGAGCTTGGTTTCACCTTCCCACATGTCA 110878 | || | || || ||||| || ||| || | |||| | | |||||| ||| Sbjct 3379 CTTTTAATGCCGACCAATCCCACAAGTCAGT--AGGT--GTTTTA---TTCCACATATCA 3327 Query 110879 AACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCT 110938 | || || | |||| | | ||| | || | |||||||||| | ||| | | Sbjct 3326 TATTGTAGTATTCCTTTGCTAACTGGACAGCCGGGATAGGTTTCATATGTACCATATTTT 3267 Query 110939 TCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCA 110998 || ||||||||||| || ||||| | || | | ||| ||||||||||| || | Sbjct 3266 TCTGCCAATTCACAACTGGCCTCTAAGGCACCATAATAAATGGTTTCAAATATTTGTTGG 3207 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 |||| ||| | || ||| | | | |||| ||||| || ||| || Sbjct 3206 TTCAATAAAAAGGCCTGTTCACTCTCATAGGGGAAGCGCATTAAAATCAAAGTATCAGCA 3147 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTC 111115 | ||| || ||||| | |||||| || | || |||| |||||| |||| | | | | Sbjct 3146 AAACCCTGGACACCTATACCAATGGGGCGATGACGCAGATTAGATTTCTTTGCCTCTGGC 3087 Query 111116 TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 | ||||||| ||||| |||| || | | |||| ||| |||||| || || || Sbjct 3086 ---AGGGGATAATAATTTATGTCTATAATTTTATTTAAATTCCTGGTAATAACTTTAGTA 3030 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 | | | | ||| | | | || || || |||| | ||| || | ||| Sbjct 3029 ACATTTTTCAATTTCTTAAAGTCGAATGTTT---TCTCAGGTGTAACAAACATATTAAGC 2973 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || || || |||||||| ||||| || | ||||| | | || |||| ||||||| Sbjct 2972 GCAATGGAGGCCAAATTACAAACGGCTATTTCATCGGGGGCAGAATATTCTACAATTTCT 2913 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 ||||| | |||| | ||||| || || | ||| | ||||||||||| || || Sbjct 2912 GTACACAGGTTGCTGCATTTAATAGTGCCTATATTTTGCTGGTTACTCTTGCGATTACAG 2853 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||||||||| | ||||||||| || || || || Sbjct 2852 GCATCCTTGTATAACATGTAGGGTGTACCAGTTTC 2818 >seq172082 Length=56793 Score = 96.9 bits (106), Expect = 4e-15 Identities = 332/506 (66%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||||||||| || || || | |||||| ||||| || || ||||| ||||| || || Sbjct 14866 ACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTTT 14925 Query 122736 CTTCAACCAATAAATAGCGCAGAATGAC--CCGGAGAAGAAGATACCCTCCACACACGCA 122793 ||| | |||| |||| || || | || || |||||| |||||||| ||| ||| Sbjct 14926 CTTGAGCCAA--AATATCGAAGCAAAACTACCACTGAAGAAAATACCCTCGACAGCAGCA 14983 Query 122794 AACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA-CCATTTCATTGCCC 122851 || |||| || || || | || ||| || || | || ||| ||| ||| |||| Sbjct 14984 AATGCAATAATACGCTCACCAAAATTAGCC-GATTTAG-ATGAAATCCAAGACATGGCCC 15041 Query 122852 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT-T 122910 | | ||||| || || | ||| | ||||| || || | ||||| | |||| | Sbjct 15042 AATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGATA-TTCTCGT 15100 Query 122911 TCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATT 122970 | | | |||||||||||| ||||||| || | ||| ||||| || || || Sbjct 15101 TGATCACGATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCGGAGTGTACATTT 15160 Query 122971 TCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || |||||| ||| | | ||||| | || || || ||| || ||||| | | Sbjct 15161 TCC--ATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGCACCTCTTGGG 15218 Query 123029 CAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGA 123088 ||| | | | ||| ||| ||| || |||||||| | |||||||||||||| | Sbjct 15219 AGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAGAATGCCAGAA 15278 Query 123089 TGTACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGG 123148 || || || | |||||| || | || | | |||||| | ||| |||| Sbjct 15279 CGTGTGAAATAAAATGACGTTCATTGTCGGTAAGTCTTTCCCAGTCAGAATTATCCTTGG 15338 Query 123149 ACAAATCAACTTCTTCCGCAGTCCAA 123174 | | ||||||||| || | |||||| Sbjct 15339 AGAGATCAACTTCCTCAACGGTCCAA 15364 >seq123671 Length=1854 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/185 (73%), Gaps = 9/185 (5%) Strand=Plus/Plus Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303 ||| || || |||||||| ||||| || ||| |||||||| ||||| || ||||| Sbjct 636 TGCTAAGTTACAAACAGCTACTTCATCTTTGCTTGTATACTCTAATATTTCAGTGCATAA 695 Query 111304 GTTGGAACT--CTT--AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 ||| ||| ||| ||| ||| |||||||| || || |||| | |||||| |||| Sbjct 696 GTT---ACTTCCTTTCAATACTCCT-AAATTCTTCTGATTGTTCTTTTCGTTGCATGCAT 751 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||||| ||||| || || | || || || |||||| || | ||| || ||||||| Sbjct 752 CCTTGTAAAGCATATACGGATTGCCTGTTTCAATCTGTGCTTCAATAATTGCTTTCCAAA 811 Query 111420 -CATC 111423 |||| Sbjct 812 GCATC 816 >seq172236 Length=40455 Score = 86.0 bits (94), Expect = 8e-12 Identities = 212/319 (66%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 11624 CCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCA 11683 ||||| |||||||| ||||| ||||| | |||||| || ||||| || || ||| | Sbjct 10226 CCCACAGCATCAATTTCATCGATGAACAAAATACAAGGAGCATTTTTTCGTGCCATTGCG 10167 Query 11684 AAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCA 11743 || | ||| || || || | || ||||| |||||||| |||| || | | | Sbjct 10166 AACATATCTCGCACTCTAGAAGGGCCAACACCCACAAACATTTCCAAGAACTCAGAACCG 10107 Query 11744 GAGCACTGGA-TGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 11802 || || | | | || || ||||| | ||| || ||| ||||| || || | ||||| Sbjct 10106 GAA-ACGGTAATAAAAGGTACATTGGCTTCTCCAGCGGTGGCTTTAGCAAGTAAAGTCTT 10048 Query 11803 TCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAA 11862 ||||||||| || ||| | | | ||| ||| || || |||||||| ||| Sbjct 10047 TCCCGTACCAGGGGGACCAGTTAACATGGCTCCTTTTGGTATTTTGGCACCCAAATCAAT 9988 Query 11863 ATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 |||| | || | |||||||| | || | ||| || |||| ||||||| | || Sbjct 9987 ATATTGTTGAGGATTTTTGAGAAAGTTTACGAACTCCATAATTTCAATTTTGGCCTCTTC 9928 Query 11923 AATCCCCTCAACATCACTG 11941 | || ||||||| ||| Sbjct 9927 ACAGCCAGCAACATCCCTG 9909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626521112016000