Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq173136 149 7e-31 seq172082 98.7 1e-15 seq31717 96.9 4e-15 >seq173136 Length=30018 Score = 149 bits (164), Expect = 7e-31 Identities = 579/904 (64%), Gaps = 11/904 (1%) Strand=Plus/Plus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 ||||| || | ||| | |||||||| || | || ||||| ||||| || || | || Sbjct 2602 GATCTTTTTTATGCTTTATGGATTCCCGACTTGTTTATGAAAAGAGTAGAAGAAAACGGT 2661 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAG 104818 | ||||| | | ||||| | || || || || |||| | |||||| ||| Sbjct 2662 GACTGGTCCTTAATGTGTCCCCATAAATGTCCCGGCCTGCAGGATGTCTGGGGTGAAGAG 2721 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCT 104878 |||||| | || || ||||| || ||||||| || | | || || || Sbjct 2722 TTTGAACAGTTGTATACCAAGTATGAAAAAGAAGGCAAAGCTAATCGCACTGTTAAGGCA 2781 Query 104879 GCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTT 104938 | | | ||| || || | || | ||| || ||||||||||| |||||| | Sbjct 2782 CAGGCTCTATGGTTTGCCATCATTGAGGCCCAAGTAGAAACTGGTACACCCTACATGTTA 2841 Query 104939 TACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCC 104998 ||||| || |||||||| | |||||||| || | ||| | || || || | | Sbjct 2842 TACAAGGATGCCTGTAATCGCAAGAGTAACCAGCAAAATATAGGCACTATTAAATGCAGC 2901 Query 104999 AATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTC 105058 || || ||||||||||| | |||| | | | | ||||| | || || ||||| | Sbjct 2902 AACCTGTGTACAGAAATTGTAGAATATTCTGCCCCCGATGAAATAGCCGTTTGTAATTTG 2961 Query 105059 GCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 105118 || || || || || | || ||| || ||| || ||||| || | | | ||| Sbjct 2962 GCCTCCATTGCGCTTAATATGTTTGTTACACCTGAG---AAAACATTCGACTTTAAGAAA 3018 Query 105119 CTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTT 105178 | | | ||||| ||| | | |||| || |||| | | |||| || | ||||| | Sbjct 3019 TTGAAAAATGTTACTAAAGTTATTACCAGGAATTTAAATAAAATTATAGACATAAATTAT 3078 Query 105179 TA-CCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGT 105237 || |||| ||| || ||||||||| || | || || || |||||| | ||||| Sbjct 3079 TATCCCCTGCCAGA-GGCAAAGAAATCTAATCTGCGTCATCGCCCCATTGGTATAGGTGT 3137 Query 105238 TCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAA 105297 |||||| | || ||| || ||| | ||| | | | ||| || | || Sbjct 3138 CCAGGGTTTTGCTGATACTTTGATTTTAATGCGCTTCCCCTATGAGAGTGAACAGGCCTT 3197 Query 105298 GGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGA 105357 | | || | |||||||| ||||| ||| | | || | ||||| |||| || Sbjct 3198 TTTATTGAACCAACAAATATTTGAAACCATTTATTATGGTGCCTTAGAGGCCAGTTGTGA 3257 Query 105358 GTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGT 105417 |||||||| ||||| |||||||||||| | || | ||||| | |||| | Sbjct 3258 ATTGGCAGAAAAATATGGTACATATGAAACCTATCCCGGCTGTCCAGTTAGCAAAGGAAT 3317 Query 105418 GCTTCAATTTGATATGTGGGAAGGTGAGACCAA---GCTTCACTACGACTGGGAAGCTCT 105474 || |||| |||||||| |||| | ||| | ||| | || ||| || | Sbjct 3318 ACTACAATATGATATGT-GGAATAAAACACCTACTGACTT--GTGGGATTGGTCGGCATT 3374 Query 105475 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAAC 105534 || ||| |||||| | | ||| | |||||| | | || || ||||| ||||| || Sbjct 3375 AAAAGAAAAAATCAAGCAACATGGTGTACGTAACTCTTTGCTTATTGCTCCCATGCCTAC 3434 Query 105535 AGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACAT 105594 ||| || ||||| || || ||||| |||||||||| |||||||| || || | ||||| Sbjct 3435 AGCATCTACCGCTCAGATTTTGGGCAATAATGAATCATTTGAACCTTATACTTCTAACAT 3494 Query 105595 CTAT 105598 ||| Sbjct 3495 ATAT 3498 >seq172082 Length=56793 Score = 98.7 bits (108), Expect = 1e-15 Identities = 453/704 (64%), Gaps = 20/704 (3%) Strand=Plus/Minus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 |||||| | ||| || || |||||||| |||||| || ||| | | || | || Sbjct 15364 TTGGACCGTTGAGGAAGTTGATCTCTCCAAGGATAATTCTGACTGGGAAAGACTTACCGA 15305 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 |||||| | || || | || | |||||||||||||| | |||||||| || || Sbjct 15304 CAATGAACGTCATTTTATTTCACACGTTCTGGCATTCTTTGCCGCTTCCGATGGTATAGT 15245 Query 94560 TTTTGAGAATATCAATAACAACTTTGCTG--ATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 | ||| ||| | | | || || || | ||||||||| | || || | | Sbjct 15244 TAATGAAAATCTTGTTGA--ACGTTTCTCCCAAGAGGTGCAAGTAACAGAGGCTCGTTGT 15187 Query 94618 TTCTATGCGTATC---AGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTC 94674 ||||||| || || | || ||| |||| || || || | || |||| | Sbjct 15186 TTCTATG-GTTTCCAAATTGCCATG--GAAAATGTACACTCCGAAATGTATAGTATTTTA 15130 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGA-AGAAGCAGCTCTTTGAAGCCATCCAAAC 94733 || |||| || ||||||||| ||| | | |||| | || ||| | || || |||| Sbjct 15129 ATTGACACTTACATTAAGGATCGTGATCAACGAGAAT-ATCTATTTAATGCTATTGAAAC 15071 Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGC 94792 | || | || | || || |||||||| ||| ||| ||| || ||| ||| Sbjct 15070 TATGCCAGCTGTTAAGCGTAAGGCCGATTGGGCCATGTCTTGGATTTCATCTAAA-TCGG 15012 Query 94793 GTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTT 94852 | |||| |||||| | | |||||||| ||| |||||||| |||||| |||| Sbjct 15011 CTAATTTTGGTGAGCGTATTATTGCATTTGCTGCTGTCGAGGGTATTTTCTTCAGTGGTA 14952 Query 94853 CCTT--CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || || || ||||| ||||||||||| || ||||| ||||| || || ||||| Sbjct 14951 GTTTTGCTTCGATATTT--TGGCTCAAGAAACGTGGTCTTATGCCTGGCCTTACATTCTC 14894 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAA 94970 ||| || | ||||| ||||| ||||| | || || ||||| || | | || || Sbjct 14893 CAATGAATTGATCTCACGTGATGAGGGTTTACATTGTGATTTTGCTGTTTTAATGTTTAA 14834 Query 94971 ATTATTGCGTATTA-AACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 95029 | ||| ||| | || | | || | ||| | || || ||| || || Sbjct 14833 A-CATTTGGTACAACGTCCTAGTAGGGATAGAATTATTGAAATCATTTCGGAGGCGGTAA 14775 Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089 | ||||| | | |||| || ||||| || || | | || |||||||||| | Sbjct 14774 AAATTGAACAGGAATTCTTAACAGATGCTCTACCCGTAAATTTGATTGGTATGAATTGTA 14715 Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTG 95133 || ||||| ||||||||||||| ||| | ||| | |||||| Sbjct 14714 AATTGATGTCGGAATATATTGAGTTTGTGGCCGATCGTTTGTTG 14671 >seq31717 Length=19532 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 ||| || |||||| | | ||| ||||| || ||||| | ||||| || | |||||| || Sbjct 6957 ATCTTTGCCACCCGTTAAACGAGTACCGAATTGACCTCTAGGCTCTAGCAAATTGATGTT 7016 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCACC 168576 || ||||||| || | | || || || ||||| || |||||||||||||| Sbjct 7017 ATTAGAACCCACATAATTTTGAGCTAAATTAACAATAGTCATTTGTAGAGAGACTTCACC 7076 Query 168577 GTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCATC 168636 || ||||| ||| | | || || ||| | | | ||| || || || || | ||| Sbjct 7077 ATGATGGTAGGCAGACATTTCAGCAACAGAACCGGACAATTGAGCAACCTTGACTTCACG 7136 Query 168637 CTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCATC 168696 ||| ||| | ||| || | | |||||||||| ||||| |||||| | |||||| Sbjct 7137 TTTGTCATTACGTTTGAAACAGGTGAACATAACCTTACGTTGACCAGGCTTAAAACCATC 7196 Query 168697 CGCCAT 168702 | |||| Sbjct 7197 CACCAT 7202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581857620330400