Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq31717 93.3 5e-14 seq172082 86.0 7e-12 >seq31717 Length=19532 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/276 (67%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| || ||| |||||||| | | ||| ||||||||||| Sbjct 6931 GTGAAAATATAACGAGCGCTAGCGCAATCTTTGCCACCCGTTAAACGAGTACCGAATTGA 6990 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || ||||| | | || | ||| || | |||||| | |||||||| || || ||| Sbjct 6991 CCTCTAGGCTCTAGCAAATTGATGTTATTAGAACCCACATAATTTTGAGCTAAATTAACA 7050 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| || | |||||||| || || || | | || || || | || Sbjct 7051 ATAGTCATTTGTAGAGAGACTTCACCATGATGGTAGGCAGACATTTCAGCAACAGAACCG 7110 Query 117485 GCCAGCTGAGCCAC-----CTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAA 117539 | || ||||| || ||||| || || | | | || |||| |||| | | Sbjct 7111 GACAATTGAGCAACCTTGACTTCACGTTTGTCATTACGT-----TTGAAACAGGTGAACA 7165 Query 117540 TCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCA 117575 | ||||| || |||| ||||| | ||||||| ||| Sbjct 7166 TAACCTTACGTTGACCAGGCTTAAAACCATCCACCA 7201 >seq172082 Length=56793 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||||||||| || || | ||||||||||||||| ||||| ||||| | |||||| || Sbjct 14882 ATCAATTCATTGGAGAATGTAAGGCCAGGCATAAGACCACGTTTCTTGAGCCAAAATATC 14941 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | | || |||||||||||| || || |||||| ||||| || Sbjct 14942 GAAGCAAAACTACCACTGAAGAAAATACCCTCGACAGCAGCAAATGC 14988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545899535108000