Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq175891 185 1e-41 seq5262 179 4e-40 seq185055 136 4e-27 seq188148 134 2e-26 seq137448 132 5e-26 seq22680 95.1 1e-14 >seq175891 Length=10111 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | ||||||||||| ||||| | || || ||| || | Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | |||||||||||||| || || || || ||||||||||| ||| Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| || |||||||| | || |||| ||||| | | || ||||| Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAAC 9409 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| | || |||||||| || ||||| Sbjct 9410 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9456 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | |||||||||||||| || | || |||||| || | Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||||||||| || ||||| || || ||||| ||||| || Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||||||||| ||| | || |||| ||||| | | ||||| || Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| || ||||| |||| || ||||| || ||||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGTGG 9000 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | |||||||||||||| ||| | || |||||| || Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | ||||| ||||| || || || || || ||||||||||| || Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| |||||||| ||| | || || | || || | | || ||||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || ||||| | || |||||||| || ||||| Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9684 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || | || || || ||||| || | || || ||| || | Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCT 9061 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||||||||||| ||||| ||||| || ||||| |||||||| Sbjct 9062 GATACTATAGAGAATGTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACCAA 9121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||| || |||||||| | || |||| ||||| | | || ||||| Sbjct 9122 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATAAC 9181 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| | || ||||||||||| ||||| Sbjct 9182 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTCGTGGTGG 9228 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || ||||| || || ||| | ||||||||| | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||||||||| |||||||| ||||| || ||||| || Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | ||||||||||| || ||| | || || | || || | | || || ||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| |||||||| | ||| | || || ||| | || ||||| Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGG 8544 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || |||||||| || || | ||||| || | Sbjct 8089 AATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCTTC 8148 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| || | |||||||||||||| || |||||||| ||||| ||||| || Sbjct 8149 TGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGATCA 8208 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||| ||||| ||| | || || | || || | | || || || Sbjct 8209 ACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTACAA 8268 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || |||||| | || | |||||||| ||||| Sbjct 8269 CATTCAAAAAGAATCTACACTTCATTTGGTTCTACGTCTTCGTGGTGG 8316 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || || || || || | || |||||| || Sbjct 9990 ATGCAAATCTTCGTCAAGACCTTGACAGGTAAAACCATCACCTTGGAAGTTGAGCCATCC 10049 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| ||||| || ||||| || || ||||||||||| || Sbjct 10050 GACACCATTGAAAATGTCAAGGCAAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 10109 Query 27526 CA 27527 || Sbjct 10110 CA 10111 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||| |||||||| ||| | ||||||| |||||| || | ||||| || | |||||| Sbjct 9891 ATTTTCGCTGGTAAACAATTGGAGGATGGTCGTACATTATCCGACTACAACATTCAAAAG 9950 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| | || |||||||| || ||||| Sbjct 9951 GAATCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9988 >seq5262 Length=11329 Score = 179 bits (198), Expect = 4e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || ||||| || || |||||||| || | Sbjct 3379 AATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTC 3320 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| |||| | || || || ||||||||||| ||||||||||| ||||| || Sbjct 3319 TGATACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCA 3260 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||| ||||||||||||| || || | || |||| |||||| || | ||||| || Sbjct 3259 GCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAA 3200 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | ||||||||||| || | || | || ||||||||||| |||||| Sbjct 3199 TATTCAAAAGGAATCGACATTGCACTTGGTTTTGCGTCTTCGTGGTGGA 3151 >seq185055 Length=12631 Score = 136 bits (150), Expect = 4e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||| ||||| ||| | || || || || |||| ||||| |||| | |||||| Sbjct 12628 ACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAGGCT 12569 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || || || || ||||| ||||| || || ||| | || || ||||| || Sbjct 12568 AAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGCAAA 12509 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | ||||||| ||||| || | ||||| || ||||||||||||| ||||| ||| Sbjct 12508 CAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTCCAT 12449 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||||||||| || Sbjct 12448 TTGGTGCTACGTCTTCGCGGAGG 12426 >seq188148 Length=18106 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || | || || || || ||||| | || || ||| | Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||||||||| || ||||| || || || || ||||| || Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || || || ||||| ||| | || |||| ||||||| | | ||||| || Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||| | ||| | || | || ||||| ||||| Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGCCTTCGTGGTGG 3613 >seq137448 Length=735 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||||||||| || || || || ||||| ||||| | || ||||| || Sbjct 256 AATGCAAATCTTTGTCAAAACACTCACGGGAAAGACAATTACATTGGAAGTTGAAGGGGG 197 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| | ||||| ||||| |||||||| || || || ||||| ||||| Sbjct 196 TGATACAATTGAGAATGTAAAGGCGAAAATACAGGACAAAGAAGGGATACCTCCTGACCA 137 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || ||||| || ||||| || ||||||| | || || |||||||| Sbjct 136 GCAAAGATTGATATTTGCAGGGAAGCAGCTTGAGGATGGAAGGACATTAAATGACTATAA 77 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||| ||| | ||||| || ||| | || | ||||| Sbjct 76 TATACAGAAGGAGAGTACTTTACATCTTGTGTTGAGACTGAGAGGTGG 29 >seq22680 Length=2395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||||||||| || || || || ||||| || | | ||||| || Sbjct 1002 AATGCAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCAC 943 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || || || || || ||||| || ||||| ||||||||||| Sbjct 942 AGACACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 883 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | | || || || ||||| || |||||||||| | ||||| ||||| || Sbjct 882 ACAAAGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTACAA 823 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 ||||||||||| ||| | ||||| || Sbjct 822 CATCCAAAAGGAAAGCACCTTACATCTGGT 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568938375755200