Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq188148 111 1e-19 seq175891 109 3e-19 seq5262 93.3 3e-14 seq185055 86.0 4e-12 >seq188148 Length=18106 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||| | |||| |||||||| ||||| || || || Sbjct 3613 CCACCACGAAGGCGGAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGAC 3672 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || ||||| ||||| || || || Sbjct 3673 AAGGTACGACCATCTTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGG 3732 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | || || | ||| ||||| ||| || Sbjct 3733 ATACCTTCTTTGTCTTGGAT-TTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGAC 3791 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 3792 TTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq175891 Length=10111 Score = 109 bits (120), Expect = 3e-19 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || || || |||||||| ||||||||||| || Sbjct 9228 CCACCACGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGAC 9169 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | || |||||||| || || ||||| |||||||| || || Sbjct 9168 AATGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGA 9109 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCC 34656 | || ||||| || ||| ||| | || || | || || || | ||||| Sbjct 9108 ATACCTTCCTTATCCTGGAT-TTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCT-- 9052 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| ||| || ||||| || || || ||||||||||| || ||||| Sbjct 9051 ACTTCCAAGGTGATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||||| || || || ||||||||||| ||||| || Sbjct 8316 CCACCACGAAGACGTAGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGAC 8257 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | ||||||||||||||| || ||||| ||||| || || || Sbjct 8256 AAAGTGCGTCCGTCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 8197 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||| | || ||| | ||| || || || || Sbjct 8196 ATACCCTCCTTATCT-TGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGAC 8138 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || || || ||||| || ||||| || || ||||| || Sbjct 8137 CTCTAAGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || ||||||||| ||||||||||| || | || || Sbjct 9675 AGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGT 9616 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||||||||| || || || ||||| ||||| || || || | || || Sbjct 9615 CCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCT 9556 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||||| || || | ||| || || ||| ||||||| || Sbjct 9555 TTATCTTGGAT-TTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGT 9497 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || ||||| || || || ||||| Sbjct 9496 GATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 96.9 bits (106), Expect = 2e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || || || || || || ||||| ||||| ||||| || | ||| || Sbjct 8763 AGACGTAATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGT 8704 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || |||||||||||||| || || || | || || Sbjct 8703 CCATCTTCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCT 8644 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||||||| | || || || || || || | || Sbjct 8643 TTGTCTTGGAT-TTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGT 8585 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || ||||| ||||| || ||||| |||||| Sbjct 8584 AATTGTTTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 Score = 84.2 bits (92), Expect = 1e-11 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||| || || || |||||||| ||||||||||| || | || || Sbjct 9447 AGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGT 9388 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || |||||||| || || ||||| || || || || || | || || Sbjct 9387 CCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCT 9328 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC--TTCGCTCTCCACTTCCACG 34665 || ||| ||| ||| | || || | ||| || || | ||||| ||||||| | Sbjct 9327 TTATCT-TGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCT--ACTTCCAAG 9271 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || ||||| || || || || || || ||||| Sbjct 9270 GTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 >seq5262 Length=11329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || | || ||||||||||| || || || ||| Sbjct 3152 CCACCACGAAGACGCAAAACCAAGTGCAATGTCGATTCCTTTTGAATATTGTAGTCAGAA 3211 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||| || ||||| |||||||| || || || || || Sbjct 3212 AGAGTACGACCATCTTCCAACTGTTTTCCAGCAAAAATTAAACGTTGCTGATCTGGTGGA 3271 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| ||||| ||| || | |||||| | ||| || || || || Sbjct 3272 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCAATGGTATCAGAAGGTTCGAC 3330 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 3331 CTCAAGTGTGATGGTCTTACCCGTTAGGGTTTTAACAAATATCTGCAT 3378 >seq185055 Length=12631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||| | ||||||||||||||| |||||||| ||||| || || | Sbjct 12424 CGCCTCCGCGAAGACGTAGCACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 12483 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || || | || || | |||||| || || || || ||||| ||||| || || | Sbjct 12484 ACAGAGTACGGCCATCCTCTAATTGTTTGCCAGCGAAGATCAAACGTTGTTGATCTGGGG 12543 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | || || || ||| |||||| Sbjct 12544 GAATGCCTTCTTTATCTTGGATCTT 12568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 313991368283180