Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq62959 102 3e-17 >seq62959 Length=655 Score = 102 bits (112), Expect = 3e-17 Identities = 228/340 (67%), Gaps = 7/340 (2%) Strand=Plus/Minus Query 38819 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 38878 || |||||||| ||||| || || ||||| || | | || ||| | ||||| | Sbjct 344 TATATTTTCTTTCTAAAAGCGACAGCATAAAACTCATCTTGTATCGTTCTGTGGAATCTC 285 Query 38879 TCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTT 38938 || ||||| ||||| || || || ||| |||| || || || || ||||| || | Sbjct 284 TCACAGATGCCATTTGTTTGAGGGCTCTTAGCTTTAGTCTTGGTGTGGTCTATATCTTCA 225 Query 38939 ATCGCTAAA---TAAAGCTCATAATCGTGAT--TTTCTACCTTGCCACAATATTCACTTC 38993 || || | | || || | ||| || |||| | ||| || || ||||| ||| ||| Sbjct 224 ATAGCAACAAGATATAGTTGATATTCATGATGCTCTCTGACT--CCGCAATACTCAGTTC 167 Query 38994 CTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTT 39053 ||| || || || | |||||| | ||| | || |||||| | || | |||| Sbjct 166 CTCTATCGGTCAACACGCGTAATAATCTTAATTCATGCTCGTCAAAGAAGGGCACAACTT 107 Query 39054 TATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACG 39113 |||||| | |||||| ||||| | | ||| |||| | ||| || || ||||| | Sbjct 106 GATCATTTAACATATCAGCAGCCATCAGAGCTTTCTTTCTATCATACAGCTTGGCAAATG 47 Query 39114 CCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAAT 39153 |||| || || ||||||||||| ||||| | ||||| Sbjct 46 CCACCTTTGAATAGGTATCAATAAAGGTTTGCAGGTAAAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159762033460800