Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq175891 113 3e-20 seq188148 105 5e-18 seq5262 95.1 9e-15 >seq175891 Length=10111 Score = 113 bits (124), Expect = 3e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 ||||| |||||| || ||||||||| |||| || || ||||| || ||||| Sbjct 9533 GTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATTTTC 9592 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| |||| ||||| ||||||||||| ||||||||||| ||| Sbjct 9593 GCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAACATCCAAAAGGAGTCT 9652 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || | || |||||||||||| | ||||| || Sbjct 9653 ACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9684 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || ||||| || |||||||| || ||||||||||| Sbjct 8411 GACAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCTGGCAAACAATTGGAA 8470 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| |||| ||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 8471 GACGGGCGCACATTGTCTGATTACAATATTCAAAAAGAATCCACATTGCATTTGGTATTA 8530 Query 28003 CGTTTGCGTGGCGGC 28017 ||||| ||||| ||| Sbjct 8531 CGTTTACGTGGTGGC 8545 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || || ||| |||| || || ||||| || ||||||||||| ||||||||||| Sbjct 8183 GATAAGGAGGGTATTCCCCCAGATCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAA 8242 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||||||||||||||| |||||||| || | ||||||||| | Sbjct 8243 GACGGACGCACTTTGTCCGATTACAACATTCAAAAAGAATCTACACTTCATTTGGTTCTA 8302 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 8303 CGTCTTCGTGGTGG 8316 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| |||||| | || || ||| | Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | || || || ||| ||||| |||||||||||| |||| || || Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || ||||| || || || ||||||||||| || | ||| | ||||||||||||||| Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || | || || || || ||| | ||||| || Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGG 8772 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || ||||||||| |||| || |||||||| || ||||| ||||| || || ||||| Sbjct 9323 GATAAAGAAGGTATTCCTCCAGATCAGCAACGTTTGATTTTCGCCGGTAAGCAGTTGGAA 9382 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | ||||||||||| ||||||||||| || || | || ||||||||| Sbjct 9383 GATGGACGTACTTTGTCCGATTATAACATCCAAAAGGAATCTACCCTTCACTTGGTTTTG 9442 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 9443 CGTCTCCGTGGTGG 9456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 8867 GACAAAGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 8926 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | ||||| || ||||||||||||||||| || | || || || || Sbjct 8927 GATGGCCGTACATTGTCGGACTACAACATCCAAAAAGAATCTACCCTTCACTTAGTATTA 8986 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 8987 CGTCTCCGTGGTGG 9000 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| | ||||| ||| ||| || | || || || | Sbjct 9002 ATGCAAATCTTTGTGAAAACCTTGACTGGAAAAACTATCACCTTGGAAGTAGAGCCATCT 9061 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| || || |||||| |||| || | Sbjct 9062 GATACTATAGAGAAT--GTAAAGGCTAAAATCCAGGATAAGGAAGGTATTCCCCCAGACC 9119 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || ||||| ||||| || || ||||| || | ||| | ||||| ||||| | Sbjct 9120 AACAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACATTGTCTGATTATA 9179 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || || | || |||||||||||| | ||||| || Sbjct 9180 ACATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTTCGTGGTGG 9228 >seq188148 Length=18106 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || || |||||| | ||||| ||| ||||| | || ||||| || Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| ||||| |||||||||||| | || || | Sbjct 3779 GACACCATTGAAAAT--GTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATC 3722 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || || || ||||| ||||||||||| || | || | ||||||||| |||| Sbjct 3721 AACAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACA 3662 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||||| |||||||| | || | ||||| || Sbjct 3661 ACATCCAAAAGGAATCCACTTTACATTTGGTACTCCGCCTTCGTGGTGG 3613 >seq5262 Length=11329 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || || || || || ||| |||| |||||| | Sbjct 3379 AATGCAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTC 3320 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || ||| || || |||||||| || |||| || Sbjct 3319 TGATACCATTGAAAAT--GTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGAT 3262 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| ||||||||||| |||||||| ||||| || | || | | || || ||| Sbjct 3261 CAGCAACGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTAC 3202 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || || ||||| |||||||||||| | ||||| || Sbjct 3201 AATATTCAAAAGGAATCGACATTGCACTTGGTTTTGCGTCTTCGTGGTGG 3152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355027686930420