Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq175891 98.7 9e-16 seq137448 96.9 3e-15 seq20636 91.5 1e-13 >seq175891 Length=10111 Score = 98.7 bits (108), Expect = 9e-16 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||| || | ||| ||||| |||||||| | ||| ||||| Sbjct 8561 TAACGAAAATTTG--CATGCCACCACGTAAACGTAATACCAAATGCAATGTGGATTCTTT 8504 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| ||||| | | ||| || |||| || | |||||||| ||||| || | Sbjct 8503 TTGAATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCAGCAAAAATCAA 8444 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 ||| || || || | ||| | | || ||||| ||||| ||| | | | | Sbjct 8443 ACGTTGTTGATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTTACATTTTCAAT 8384 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||||| | ||| || |||| ||||| |||| || |||| || || |||||||| Sbjct 8383 AGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTCTTGACAAAGAT 8324 Query 39279 TTGCAT 39284 |||||| Sbjct 8323 TTGCAT 8318 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || || || ||||| || |||||||| | | ||| ||| | Sbjct 9216 CGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCA 9157 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||| || || || || || | ||| || ||||| | ||| | | || || Sbjct 9156 TCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTA 9097 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| || | || | | ||||| | ||| || |||| |||||| Sbjct 9096 TCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATA 9037 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||||| |||| ||||| |||||||||||||| Sbjct 9036 GTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 >seq137448 Length=735 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 39048 TTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATT 39107 |||||| | || ||||| | | ||||| | ||||| || ||||| || |||||||| Sbjct 21 TTTATTTA--CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTATATT 78 Query 39108 ATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTG 39167 ||| || | ||| | | | || |||||||| || || |||||||| | | ||||| Sbjct 79 ATAGTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTTGCTG 138 Query 39168 GTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCT 39227 ||| | || | | ||||||||| |||||| || | || | | ||||| | Sbjct 139 GTCAGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTATCACC 198 Query 39228 CGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA--TC 39285 | || || |||| || || | |||||||| || ||||| ||||||||||||| || Sbjct 199 CCCTTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCATTTC 258 Query 39286 TTTA 39289 |||| Sbjct 259 TTTA 262 >seq20636 Length=14080 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Plus Query 92295 TATAAACAA-TGTGTATTTATTGCAAT--TTTAAGAAAAATATACACGAATAAAAGTGGC 92351 |||||| || | | || | ||| ||| |||| |||||||||||||| |||| | ||| Sbjct 4900 TATAAATAACTATATAAGTTTTGTAATAATTTATGAAAAATATACACGCATAACATTGGT 4959 Query 92352 AAAAGGTTTGCGGCACATGGGACATGTTGGATTAATAGAAAACGCACACTTGACACACGC 92411 ||||| ||| || |||| ||||||| |||| ||| || | || |||||| |||| || Sbjct 4960 AAAAGATTTTCGACACAGGGGACAT-TTGG--TAACGGAGGAAGCGCACTTGGCACAAGC 5016 Query 92412 CACAATATGACCGCAAGGTA 92431 ||| | |||||| ||||||| Sbjct 5017 CACCACATGACCACAAGGTA 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428538055155980