Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq172082 196 4e-45 seq151072 86.0 5e-12 >seq172082 Length=56793 Score = 196 bits (216), Expect = 4e-45 Identities = 475/713 (67%), Gaps = 16/713 (2%) Strand=Plus/Plus Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 ||| || || || ||||| || ||||| | ||| | || || || || ||||| || Sbjct 14674 CAAACGATCGGCCACAAACTCAATATATTCCGACATCAATTTACAATTCATACCAATCAA 14733 Query 4436 TCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | || ||||| || | ||| || || || ||||| || |||| || || | || || Sbjct 14734 ATTTACGGGTAGAGCATCTGTTAAGAATTCCTGTTCAATTTTTACCGCCTCCGAAATGAT 14793 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAA 4555 || | ||| |||| || || | ||| || | | ||||| |||| ||||| Sbjct 14794 TTCAATAATTCTATCCCTACTAGGACGTTGTACCAAATGTTTAAACATTAAAACAGCAAA 14853 Query 4556 ATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCAT 4615 ||||||||| ||||| || || | |||| ||| || || || || | || ||||| Sbjct 14854 ATCACAATGTAAACCCTCATCACGTGAGATCAATTCATTGGAGAATGTAAGGCCAGGCAT 14913 Query 4616 TAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTC 4675 | ||| | || || ||||||||||| | ||||| ||| ||||| || || || Sbjct 14914 AAGACCACGTTTCTTGAGCCAAAATATCGAAGCAAAACTACCACTGAAGAAAATACCCTC 14973 Query 4676 TACGGCGGCAAACGCTACTAATCGGG--ACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || || ||||| || | |||| | ||| || ||| | || | | |||||| Sbjct 14974 GACAGCAGCAAATGCAA-TAATACGCTCACCAAAATTAGCCGATTTAGA-TGAAATCCAA 15031 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA-- 4791 | ||||| | || || |||||| || || || | ||||| ||||||| Sbjct 15032 GACATGGCCCAATCGGCCTTACGCTTAACAGCTGGCATAGTTTCAATAGCATTAAATAGA 15091 Query 4792 -ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 ||| | || ||| | || | ||| |||||||| |||| | ||||||||||| Sbjct 15092 TATTCTCGTTGATCAC---GATCCTTAATGTAAGTGTCAATTAAAATACTATACATTTCG 15148 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || |||| |||||| || ||||| || || || || || || | ||| ||||||||||| Sbjct 15149 GAGTGTACATTTTCCATGGCAATTTGGAAACCATAGAAACAACGAGCCTCTGTTACTTGC 15208 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAA 4970 || || | | || | ||| || | ||||| || |||||||| || || ||||| Sbjct 15209 ACCTCTTGGGAGAAACGTTCAACAAGATTTTCATTAACTATACCATCGGAAGCGGCAAAG 15268 Query 4971 AACGCCAAAACATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTTTTCCAGTGG 5027 || |||| ||| || || ||||| | |||| ||| | ||||| ||| ||||| Sbjct 15269 AATGCCAGAACGTGTGAAATAAAATGACGTTCATTGTCGG---TAAGTCTTTCCCAGTCA 15325 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | ||| || | | ||||||||| ||||| |||||||| || ||||| || Sbjct 15326 GAATTATCCTTGGAGAGATCAACTTCCTCAACGGTCCAAAAGGATGCTTCAGC 15378 >seq151072 Length=631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 || ||||| ||||| |||||||||| ||||||||||| || ||||| || | Sbjct 161 AACAAACAAGCAAACTCACAATGCATGCCTTCGTCTCTTGATATTAGTTCATTGCTGTAA 102 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 || | || |||||||| ||| || || | |||||| ||||| |||||||| ||| | Sbjct 101 GTCAGACCTGGCATTAAGTTTCTTTTCTTCAACCAAAAGATAGCAGCAAATGAACCACTA 42 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC 4698 || || || ||||| || ||||| |||| |||| Sbjct 41 AAAAAGATACCTTCAACACATGCAAATGCTAGCAATC 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426047909789180