Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq188148 114 3e-20 seq175891 111 4e-19 >seq188148 Length=18106 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||| || || |||||||||||||| |||| || || | ||||| Sbjct 3627 GAGTACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGACCATC 3686 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| ||||||||||| | | || || || | | ||| ||||| || || Sbjct 3687 TTCCAATTGTTTACCGGCGAAGATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTC 3746 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| ||||| |||||| | || | | |||| ||| ||| ||||| | ||||| || Sbjct 3747 TTGGATTTTAGCCTTGACATTTTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGT 3806 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || | ||| || ||||||| |||||| Sbjct 3807 TTTACCAGTTAAAGTTTTGACGAAGATCTGCAT 3839 >seq175891 Length=10111 Score = 111 bits (122), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||||||||| ||||||| ||||| | |||||||| | Sbjct 9436 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTATAATCGGACAAAGTACGTCCATCTTCCA 9378 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| || | | ||||| || | | || ||||| || ||||||| Sbjct 9377 ACTGCTTACCGGCGAAAATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAA 9318 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | | | || || ||||||||| | ||||| || |||| Sbjct 9317 TTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCTACTTCCAAGGTAATGGTCTTGC 9258 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 9257 CGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| |||||||| ||||||||||| ||||||| ||||| | || ||||| | Sbjct 9664 CAAG-TGAAGGGTAGACTCCTTTTGGATGTTATAATCGGACAAAGTGCGTCCGTCTTCCA 9606 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || ||||| || | | || || || | | || ||||| || ||||| | Sbjct 9605 ATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGA 9546 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| |||||| | || | | | || || ||| ||||| | ||| ||||| |||| Sbjct 9545 TTTTTGCCTTGACATTTTCAATGGTATCGGATGGCTCAACTTCCAAAGTGATAGTCTTGC 9486 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || || ||||||| ||||| Sbjct 9485 CGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 100 bits (110), Expect = 7e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||| |||||||| ||||||||||||| ||||| | || ||| Sbjct 8301 AGAACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCT 8242 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| ||||| || || | | || || || | | || || ||||| ||| Sbjct 8241 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTATCT 8182 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| |||| | | || ||| || || || | || || || Sbjct 8181 TGAATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTC 8122 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || | ||||||||||||| |||||||| Sbjct 8121 TTGCCAGTTAAGGTCTTCACGAAGATTTGCATTTT 8087 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| ||||| |||||||||||||||||||||| || || | |||||||| | | Sbjct 8748 TGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCTTCCAATTGT 8689 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| | | ||| || || | | || ||||| || ||||| ||||| Sbjct 8688 TTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATTTTG 8629 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||| || | |||| | || ||| || || || || ||||| ||||| ||||| Sbjct 8628 GCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGTTTTTCCCGTT 8569 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| | ||||| Sbjct 8568 AAGGTTTTAACGAAAATTTGCAT 8546 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||||||||| ||||| | || || | |||||||| | Sbjct 9208 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTATAATCAGACAATGTACGTCCATCTTCCA 9150 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||| || | | || ||||| | | || |||||||| || || | Sbjct 9149 ACTGCTTACCGGCGAAAATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTATCCTGGA 9090 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || ||| |||||| | || || ||||||||| | || |||||||| | Sbjct 9089 TTTTAGCCTTTACATTCTCTATAGTATCAGATGGCTCTACTTCCAAGGTGATAGTTTTTC 9030 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | || ||||| |||| ||||| Sbjct 9029 CAGTCAAGGTTTTCACAAAGATTTGCAT 9002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| || |||||||| | || || | ||| ||||| | ||| || Sbjct 8514 GTGGATTCTTTTTGAATATTGTAATCAGACAATGTGCGCCCGTCTTCCAATTGTTTGCCA 8455 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | | || || || | | |||||||||||| ||||||||||| ||| Sbjct 8454 GCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTT 8395 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | || ||| ||| || || | ||| || |||||||| || | ||| Sbjct 8394 ACATTTTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTGCCAGTCAATGTC 8335 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 8334 TTGACAAAGATTTGCAT 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150975600500660