Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq175891 134 1e-26 seq188148 95.1 1e-14 seq185055 89.7 4e-13 >seq175891 Length=10111 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||| || ||||| ||||||||||| || |||| || || | Sbjct 8318 ATGCAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCC 8377 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | |||||| |||||| ||||| ||||| | ||| |||||| Sbjct 8378 GATACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAA 8437 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| ||| ||||||||||||||||| || || | ||||| ||| Sbjct 8438 CAACGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAAT 8497 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||||||||| ||| | ||||| || || ||| | || ||||||| Sbjct 8498 ATTCAAAAAGAATCCACATTGCATTTGGTATTACGTTTACGTGGTGGCA 8546 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || ||||| || ||||||||||| ||||||||| ||||| || || Sbjct 9230 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCT 9289 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| || |||||||| |||| ||||| Sbjct 9290 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 9349 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || || || || ||||||||| ||| || |||||||||| Sbjct 9350 CAACGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAAC 9409 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || || || || |||||||| || ||||| Sbjct 9410 ATCCAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9456 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || |||||||| ||||||||||| || || || ||||| || || | Sbjct 9458 ATGCAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCC 9517 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| || |||||||| |||| |||||| Sbjct 9518 GATACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 9577 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | |||| || || |||||||||||||| ||| || |||||||||| Sbjct 9578 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAAC 9637 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| || ||||| || || || || |||||||| || ||||| Sbjct 9638 ATCCAAAAGGAGTCTACCCTTCACTTGGTTTTGCGTCTCCGTGGTGG 9684 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 ||||||||||| || || || || || || ||||| ||||| ||| | || ||||| Sbjct 8087 AAAATGCAAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAACCT 8146 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || ||| | || || |||||| || || || || ||||| ||| Sbjct 8147 TCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCAGAT 8206 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | |||| ||| || |||||||||||||| ||| || ||||||| Sbjct 8207 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTAC 8266 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||||||||||||||| ||||| || | ||||| || ||||| Sbjct 8267 AACATTCAAAAAGAATCTACACTTCATTTGGTTCTACGTCTTCGTGGTGG 8316 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || || |||||||| || || ||| | ||| || || Sbjct 8774 ATGCAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCT 8833 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||||| ||||||||||| ||||| |||||| Sbjct 8834 GATACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8893 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| || ||||||||||||||| || || | || || || Sbjct 8894 CAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAAC 8953 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||||||||| || || ||||| || ||||| || ||||| Sbjct 8954 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGTGG 9000 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| || || || ||||| ||||| | || ||||| Sbjct 8546 ATGCAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCG 8605 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| ||||| ||||||||||| ||||| |||||| Sbjct 8606 GATACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 8665 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | || || ||||||||||||||| || || ||||||| || Sbjct 8666 CAGCGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAAC 8725 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || |||||||||||||| || || ||||| || ||||| || || || Sbjct 8726 ATCCAAAAAGAATCTACCCTTCACTTAGTATTACGTCTCCGTGGAGG 8772 >seq188148 Length=18106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || |||||||| || || || |||||||||||| ||||| || || | Sbjct 3839 ATGCAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCC 3780 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||||| ||||||||||| | ||| |||||| Sbjct 3779 GACACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAA 3720 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | || || ||||||||||||||| | || || |||| || || Sbjct 3719 CAACGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTACCTTGTCCGACTACAAC 3660 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || ||||||| || | || || || ||||| Sbjct 3659 ATCCAAAAGGAATCCACTTTACATTTGGTACTCCGCCTTCGTGGTGG 3613 >seq185055 Length=12631 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 111121 TTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAA 111180 |||||||||||||| || || ||||| ||||| |||| | ||| | || || Sbjct 12631 TTGACCGGCAAAACTATCACTTTGGAAGTCGAACCATCCGATACCATTGAAAATGTTAAG 12572 Query 111181 CAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGC 111240 || || || ||||||||| ||||| ||||||||| | | || | || ||| Sbjct 12571 GCTAAGATCCAAGATAAAGAAGGCATTCCCCCAGATCAACAACGTTTGATCTTCGCTGGC 12512 Query 111241 AAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTA 111300 |||||||| || ||| ||| || | || || || || ||||| |||||||| || Sbjct 12511 AAACAATTAGAGGATGGCCGTACTCTGTCTGACTACAACATCCAAAAGGAATCTACTCTC 12452 Query 111301 CATTTAGTGTTGCGTCTGCGCGGTGGC 111327 ||||| ||| | ||||| ||||| ||| Sbjct 12451 CATTTGGTGCTACGTCTTCGCGGAGGC 12425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420821797012960