Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq175891 120 2e-22 seq137448 109 4e-19 seq22680 107 1e-18 seq188148 91.5 1e-13 >seq175891 Length=10111 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || |||||||||||||| || Sbjct 9463 TTGCATACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATA 9404 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | || | || |||| |||||| ||||| || |||||||| |||||||| Sbjct 9403 ATCGGACAAAGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGCTGATC 9344 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||| || || || || ||| | || | ||||| || | | Sbjct 9343 TGGAGGAATACCTTCTTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTATCAGATGG 9284 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| ||||| ||||| || || | |||||| |||||||||||||| Sbjct 9283 CTCTACTTCCAAGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 9230 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || ||||||||||||||| || Sbjct 9691 TTGCATACCACCACGGAGACGCAAAACCAAGTGAAGGGTAGACTCCTTTTGGATGTTATA 9632 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| | ||| |||| |||| || || || || || |||||||| || ||||| Sbjct 9631 ATCGGACAAAGTGCGTCCGTCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATC 9572 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || ||| | |||||| || || || || ||| | || | ||||| |||| | Sbjct 9571 TGGAGGAATACCTTCTTTATCTTGGATTTTTGCCTTGACATTTTCAATGGTATCGGATGG 9512 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || ||||| || || | ||| || |||||||||||||| Sbjct 9511 CTCAACTTCCAAAGTGATAGTCTTGCCGGTCAAGGTTTTGACGAAGATTTGCAT 9458 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || | |||||| || || ||||||||||||||||||| | | || | || Sbjct 8757 AATACTAAGTGAAGGGTAGATTCTTTTTGGATGTTGTAATCGGACAATGTACGTCCATCT 8698 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| || || || || ||||| |||||||| ||||||| || | |||||| || || Sbjct 8697 TCCAATTGTTTACCAGCGAAGATTAAACGCTGTTGATCTGGGGGAATACCTTCTTTGTCT 8638 Query 44246 GTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 || || |||| || | || |||| || || | | ||| ||||| | ||||| || Sbjct 8637 TGGAT-TTTGGCTTTAACGTTTTCTATAGTATCCGAAGGTTCAACCTCTAGTGTAATTGT 8579 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||| | ||| || ||||| ||||||||| Sbjct 8578 TTTTCCCGTTAAGGTTTTAACGAAAATTTGCATG 8545 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || || ||||| ||||||||||||| | ||| |||| ||| Sbjct 8298 ACCAAATGAAGTGTAGATTCTTTTTGAATGTTGTAATCGGACAAAGTGCGTCCGTCTTCC 8239 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || |||||||| |||||||| || ||||||| || | ||| ||||| | | | Sbjct 8238 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCCTCCTTAT-CTTG 8180 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || || | | |||| | || || || | | ||| ||||| | || || ||||| Sbjct 8179 AATTTTAGCCTTGACGTTCTCAATAGTATCAGAAGGTTCGACCTCTAAGGTGATGGTCTT 8120 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||||||||||||||||||| Sbjct 8119 GCCAGTTAAGGTCTTCACGAAGATTTGCAT 8090 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| |||||| || |||||||||||||| || Sbjct 9235 TTGCATACCACCACGAAGACGCAAAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTATA 9176 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || | || |||| |||||| ||||| || |||||||| || || || Sbjct 9175 ATCAGACAATGTACGTCCATCTTCCAACTGCTTACCGGCGAAAATCAAACGTTGTTGGTC 9116 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| ||| || || ||| | | |||| || || | | Sbjct 9115 TGGGGGAATACCTTCCTTATCCTGGATTTTAGCCTTTACATTCTCTATAGTATCAGATGG 9056 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || ||||| || | ||| ||||| ||||||||||| Sbjct 9055 CTCTACTTCCAAGGTGATAGTTTTTCCAGTCAAGGTTTTCACAAAGATTTGCAT 9002 >seq137448 Length=735 Score = 109 bits (120), Expect = 4e-19 Identities = 169/241 (70%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 44097 ATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGA 44156 || ||||||| || ||||||||||||||||| || || | || |||||||| || | Sbjct 18 ATCTTTATTTA---CCACCTCTCAGTCTCAACACAAGATGTAAAGTACTCTCCTTCTGTA 74 Query 44157 TGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCT 44216 | || || || | | | | || || ||||||||||| ||||| ||||| | | Sbjct 75 TATTATAGTCATTTAATGTCCTTCCATCCTCAAGCTGCTTCCCTGCAAATATCAATCTTT 134 Query 44217 GCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGT 44276 |||| || | ||| | ||||| || ||| ||| ||| ||| | | | || || | Sbjct 135 GCTGGTCAGGAGGTATCCCTTCTTTGTCCTGTATTTTCGCCTTTACATTCTCAATTGTAT 194 Query 44277 CGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 | | ||| || |||| ||||| |||||||||||||| || || || |||||||||| Sbjct 195 CACCCCCTTCAACTTCCAATGTAATTGTCTTTCCCGTGAGTGTTTTGACAAAGATTTGCA 254 Query 44337 T 44337 | Sbjct 255 T 255 >seq22680 Length=2395 Score = 107 bits (118), Expect = 1e-18 Identities = 175/247 (71%), Gaps = 9/247 (4%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||||||||| | ||||| || | ||||| ||||||||||||||||| ||| Sbjct 775 CCTCCTCTCAGTCTTAGTACCAGATGTAAGGTGCTTTCCTTTTGGATGTTGTAGTCGTTA 834 Query 44171 AGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAG 44228 || || || | || || ||||| || || || || ||||| | || || |||| || Sbjct 835 AG--GGTCCTTCCATCCTCGAGCTGTTTACCTGCGAATATCAATCTTTGTTGGTCTGGAG 892 Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCC 44287 | | ||||| || || ||||| ||||| | ||| | || ||||| | | ||| Sbjct 893 GGATTCCTTCTTTGTCTTGGATCTT-TGCTTTTACGTTTTCGATCGTGTCTGTGCTTTCG 951 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT---GATGTGA 44344 ||||||| | || |||||||| || || || || || ||||||||||| ||| || Sbjct 952 ACCTCCAAGGCTATTGTCTTTCCTGTTAGTGTTTTGACAAAGATTTGCATTTCTATGGGA 1011 Query 44345 ATGAAAA 44351 |||||| Sbjct 1012 TTGAAAA 1018 >seq188148 Length=18106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||||||| |||| | || | || | || |||| || || ||||| || Sbjct 3649 TCCTTTTGGATGTTGTAGTCGGACAAGGT-ACGACCATCTTCCAATTGTTTACCGGCGAA 3707 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||||||| || ||||||| || | |||||| || || || || ||| | | Sbjct 3708 GATCAAACGTTGTTGATCTGGGGGGATACCTTCTTTGTCTTGGATTTTAGCCTTGACATT 3767 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| | || || |||| ||||| || || || || | || || || Sbjct 3768 TTCAATGGTGTCGGAAGGCTCGACTTCCAAGGTAATGGTTTTACCAGTTAAAGTTTTGAC 3827 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 3828 GAAGATCTGCAT 3839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359146004267820