Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq191290 120 4e-22 seq172821 109 7e-19 >seq191290 Length=35329 Score = 120 bits (132), Expect = 4e-22 Identities = 356/544 (65%), Gaps = 24/544 (4%) Strand=Plus/Plus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||||||||| || || || || |||||||||||| | |||||||| || || | Sbjct 6862 AAGGAGATTTGGGTCCGGTGTATGGTTTTCAATGGCGTCATTTTGGTGC------CAAAT 6915 Query 50533 ATTGCG-ACGTAA-----ATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAA 50586 || || | |||| | ||| | |||| || |||||| || || | | || | Sbjct 6916 ATCGCACATGTAATGATGACTACACCAATGAAGGTGTCGATCAATTGAAAGAGGTCATTA 6975 Query 50587 CGACGTTGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCG 50646 || | || || ||| | ||| | || || | ||| | || |||||||| | Sbjct 6976 ATACCATACGCACTAATCCCAATGATAGACGCATAATTATGTCAGCTTGGAATCCTGTTG 7035 Query 50647 ATATAGATCAAACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCCACAGACA 50706 ||||| |||| | ||| || || ||||| ||| ||||| |||| | | Sbjct 7036 ATATACCACAAATGGCTTTGCCACCTTGTCACTGTTTGGCACAATTCTATGTTGCTAATG 7095 Query 50707 ATGTTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCA 50766 || ||||| ||||| |||||| | |||||||||||| | || || || || | Sbjct 7096 GTGAATTATCTTGTCAGCTATATCAACGTAGTGCTGATATGGGTCTTGGTGTACCATTTA 7155 Query 50767 ACGTAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGG 50826 | |||||||||| |||||| |||| ||| |||| ||||| || ||| ||| | Sbjct 7156 ATATAGCTTCTTATGCTTTACTAACCTATATGATTGCTCATATAACTGACCTGAGACCAG 7215 Query 50827 GAGAATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAA 50886 |||| ||||||||||| || || | ||| |||| |||| | || |||||| Sbjct 7216 GAGATTTTATTCATACCACTGGTGATACACATGTTTATAAGAATCATATTGAACCTTTAA 7275 Query 50887 AGGAGCAATTGACTCGAACGGTAAAGCCGGCGCCGATTTTAA-----TTTTAAAGA-AAA 50940 ||||||| || ||||| ||| | || || | ||| || |||||| ||| Sbjct 7276 AGGAGCA----GCTAAAACGG-AAACCACGCCCCTTTCCTAAATTGGTTATAAAGAGAAA 7330 Query 50941 AATCGATCGAACTAAGAGATTTTAAATTTGAAGATTTCGAATTGTTGGATTACGATCCTC 51000 | |||| || || ||||| |||||||||||||| ||| | | ||||| | ||| Sbjct 7331 AGTCGA-AGATATAGATGATTTCAAATTTGAAGATTTTGAAATTGTCGATTATAAACCTT 7389 Query 51001 ATCC 51004 |||| Sbjct 7390 ATCC 7393 >seq172821 Length=17278 Score = 109 bits (120), Expect = 7e-19 Identities = 198/286 (69%), Gaps = 4/286 (1%) Strand=Plus/Minus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 |||||| ||||| | || ||||| |||||||| |||||||| | || | || |||||| Sbjct 3804 AAACAAACGTCTAATATTGGCTTCTGATTCACCTACATATTTATCCAAAATTTGAGGACC 3745 Query 156224 GTTAACTATTTTGACGGGTCGTG--ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAAT 156281 ||||| || || | | | || |||||| | || | | || ||||||||||| Sbjct 3744 ATTAACAATCTT-AGGTTCCCTGGCATTTAACATATT-ACCAATTTGTCGAGCCATTAAA 3687 Query 156282 GTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAAT 156341 |||||||| || || || || ||||| || | ||||| | ||||| ||||||||| Sbjct 3686 GTTTTACCAGTACCGGGTGGACCATATAATAAAATACCTTTGACGTGTTTGCAACCTAAT 3627 Query 156342 TTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAA 156401 | ||| | || || | | |||||||||||||||| ||||||| | Sbjct 3626 TGTTCCACCAACTCAGGAGGGAAAACACGCGAAGCAAATGCTCTTCTAAAAATGGCATTG 3567 Query 156402 AATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 ||||| ||||| || || || | ||||||| | |||| ||||| Sbjct 3566 AATTCCTTATCTAAACCGCCAATTCCCATTTTACCGAAATCCCAAT 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665470383837600