Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phormia_20regina_20[genbank_20GCA_5F001735545.1_202016-09-19] 192,460 sequences; 549,932,840 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq22680 183 7e-41 seq5262 136 9e-27 seq175891 131 4e-25 seq188148 120 7e-22 seq137448 111 4e-19 >seq22680 Length=2395 Score = 183 bits (202), Expect = 7e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || |||||||| || || || | ||||| |||||| ||||| Sbjct 998 CAAATCTTTGTCAAAACACTAACAGGAAAGACAATAGCCTTGGAGGTCGAAAGCACAGAC 939 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| |||||| || |||||||||||||||||||| ||||| ||| Sbjct 938 ACGATCGAAAACGTAAAAGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAACAA 879 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||||||||| ||||||||||| ||| ||| || ||| || Sbjct 878 AGATTGATATTCGCAGGTAAACAGCTCGAGGATGGAAGGACCCTTAACGACTACAACATC 819 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||| || | ||||| || | ||||| ||| Sbjct 818 CAAAAGGAAAGCACCTTACATCTGGTACTAAGACTGAGA 780 >seq5262 Length=11329 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || || ||||| || ||||| ||| || || Sbjct 3375 CAGATATTTGTTAAAACCCTAACGGGTAAGACCATCACACTTGAGGTCGAACCTTCTGAT 3316 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||||||||||||||||| ||||| || || || |||||| Sbjct 3315 ACCATTGAAAATGTTAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGATCAGCAA 3256 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||||||| | |||||||| | |||||| | || || || | Sbjct 3255 CGTTTAATTTTTGCTGGAAAACAGTTGGAAGATGGTCGTACTCTTTCTGACTACAATATT 3196 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| ||||| ||| |||| | |||||| Sbjct 3195 CAAAAGGAATCGACATTGCACTTGGTTTTG 3166 >seq175891 Length=10111 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||| || || || ||||| ||| || || Sbjct 8549 CAAATTTTCGTTAAAACCTTAACGGGAAAAACAATTACACTAGAGGTTGAACCTTCGGAT 8608 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || || || ||||||||||| || || || || || || Sbjct 8609 ACTATAGAAAACGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 8668 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | ||||||||| | || | ||||||| ||| || Sbjct 8669 CGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGTCCGATTACAACATC 8728 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 8729 CAAAAAGAATCTACCCTTCA 8748 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || || ||| | || || || || || Sbjct 9233 CAAATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCTTGGAAGTAGAGCCATCTGAT 9292 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||| || |||||||| || ||||| || |||||| Sbjct 9293 ACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 9352 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| || ||| | ||||||||| | ||| | ||||||||||| || Sbjct 9353 CGTTTGATTTTCGCCGGTAAGCAGTTGGAAGATGGACGTACTTTGTCCGATTATAACATC 9412 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| ||||| || || || | |||||| | ||| Sbjct 9413 CAAAAGGAATCTACCCTTCACTTGGTTTTGCGTCTC 9448 Score = 122 bits (134), Expect = 2e-22 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| |||||||| || | || || || || |||||| | ||||| ||| Sbjct 8087 AAAATGC---AAATCTTCGTGAAGACCTTAACTGGCAAGACCATCACCTTAGAGGTCGAA 8143 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || ||||||||||| || ||||| || || || || || || || Sbjct 8144 CCTTCTGATACTATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAGGGTATTCCCCCA 8203 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | || || ||||| ||||| | ||||| ||| | ||| | ||||| Sbjct 8204 GATCAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGACGGACGCACTTTGTCCGAT 8263 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||| | ||||||||||| ||||| ||| | ||| Sbjct 8264 TACAACATTCAAAAAGAATCTACACTTCATTTGGTT 8299 Score = 114 bits (126), Expect = 3e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || || || ||||| | || || || || || Sbjct 9461 CAAATCTTCGTCAAAACCTTGACCGGCAAGACTATCACTTTGGAAGTTGAGCCATCCGAT 9520 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||| || || || |||||||| || ||||| || || ||| Sbjct 9521 ACCATTGAAAATGTCAAGGCAAAAATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAA 9580 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| | ||||| ||| | ||| | ||||||||||| || Sbjct 9581 CGTTTGATTTTCGCTGGTAAACAATTGGAAGACGGACGCACTTTGTCCGATTATAACATC 9640 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 ||||| || || || || || | |||||| | ||| Sbjct 9641 CAAAAGGAGTCTACCCTTCACTTGGTTTTGCGTCTC 9676 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || || || |||||| | || || || || || Sbjct 8777 CAAATTTTTGTAAAGACTTTAACCGGCAAGACTATCACCTTAGAAGTTGAGCCATCTGAT 8836 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| || || || ||||||||||| || || || || || ||| Sbjct 8837 ACCATTGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAA 8896 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || ||||| | |||||||| | || | | || || ||| || Sbjct 8897 CGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGCCGTACATTGTCGGACTACAACATC 8956 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || || || Sbjct 8957 CAAAAAGAATCTACCCTTCA 8976 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || || ||||| ||||| | ||||| || || || Sbjct 8321 CAAATCTTTGTCAAGACATTGACTGGCAAAACCATCACTTTGGAGGTTGAGCCTTCCGAT 8380 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| ||||| ||||||||||| || || || ||| Sbjct 8381 ACTATTGAAAATGTAAAAGCTAAAATTCAAGACAAGGAAGGAATCCCCCCAGATCAACAA 8440 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| || | || | | ||||| || | Sbjct 8441 CGTTTGATTTTTGCTGGCAAACAATTGGAAGACGGGCGCACATTGTCTGATTACAATATT 8500 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| ||| ||||| | || || Sbjct 8501 CAAAAAGAATCCACATTGCATTTGGTATT 8529 >seq188148 Length=18106 Score = 120 bits (132), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| |||||| | || || ||||| || ||| | || || || || ||| Sbjct 3836 CAGATCTTCGTCAAAACTTTAACTGGTAAAACCATTACCTTGGAAGTCGAGCCTTCCGAC 3777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || || || ||||||||||| ||||| || || || ||| Sbjct 3776 ACCATTGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATCCCCCCAGATCAACAA 3717 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||||||||| ||||| | |||||||| | || |||| |||| || ||| | Sbjct 3716 CGTTTGATCTTCGCCGGTAAACAATTGGAAGATGGTCGTAC-CTTGTCCGACTACAACAT 3658 Query 178103 CCAAAAAGAATCAAC 178117 |||||| ||||| || Sbjct 3657 CCAAAAGGAATCCAC 3643 >seq137448 Length=735 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| ||||| ||||| || || || | || || ||| | || Sbjct 252 CAAATCTTTGTCAAAACACTCACGGGAAAGACAATTACATTGGAAGTTGAAGGGGGTGAT 193 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || || |||||||||||||| || ||||| ||||||||| Sbjct 192 ACAATTGAGAATGTAAAGGCGAAAATACAGGACAAAGAAGGGATACCTCCTGACCAGCAA 133 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || || ||||| || ||||||||||| | || ||||| | Sbjct 132 AGATTGATATTTGCAGGGAAGCAGCTTGAGGATGGAAGGACATTAAATGACTATAATATA 73 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || | |||||||| |||||||| ||| Sbjct 72 CAGAAGGAGAGTACTTTACATCTTGTGTTGAGACTGAGA 34 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200762926757240