Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq12041 102 8e-17 seq4404 95.1 1e-14 >seq12041 Length=12732 Score = 102 bits (112), Expect = 8e-17 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 119848 GGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTT 119907 || ||| | ||| |||||||| || || |||||| |||||||||| || ||||| || Sbjct 4857 GGACCACATGCAACCCACGTAACCATTCGGATCCCTTCCATCTAAGCTATACTTATCATT 4916 Query 119908 TAAGTAGATACAGACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAttttt 119965 ||| || || || || || || || || || || |||||| ||||| ||| Sbjct 4917 -AAGCAG-TATAGCGTATTCCAAAGCCTGCTCCGGCGTTTCTGCCCATTCAAGTATCTTT 4974 Query 119966 ttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGT 120025 || ||||| ||||| || || | |||||||||||| |||| | || | ||| | ||| Sbjct 4975 TTTGCCCAATACATGCGCAAAAAGCCATGCATTTTAGCTTCGCTTACAAGTTGCAACTGT 5034 Query 120026 GCGGCGTTCCATAAGGGATCGTGTGTACGGGC 120057 || ||||||||||| |||||| || || || Sbjct 5035 GCAGCGTTCCATAAATCATCGTGAGTTCGCGC 5066 >seq4404 Length=3800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 ||||||| || ||||| | | ||| |||||||||||||| | || |||||||| || | Sbjct 2401 TTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTT 2342 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTA 17351 | || || || ||||| || || || | | ||||||||| | ||| || || | | Sbjct 2341 GGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCA 2282 Query 17352 GATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 |||||| ||||| ||||| ||| || || || || ||||| | ||| ||||||| Sbjct 2281 AATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAAT 2222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517419622931640