Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq6120 125 5e-24 seq1420 91.5 1e-13 >seq6120 Length=7451 Score = 125 bits (138), Expect = 5e-24 Identities = 376/571 (66%), Gaps = 12/571 (2%) Strand=Plus/Minus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 |||| |||||||| || | || || | || ||||| || || || |||||| Sbjct 5007 TAGACATGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGTTTAAGGCCCGTCACATGA 4948 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || |||||| | || | || | ||| || |||||||| ||||| || | |||||| Sbjct 4947 GCTATCATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAGGGCACACCCAGACCCATA 4888 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCA----TCACAGACA--TAAAAT 101875 || || | ||||||||| || || || | || || || || | || ||| Sbjct 4887 TCTGCGCTGCGTTGATACAGCTGGCAAGACAACTCACCGCGTGTCGTTGATACGTAGAAT 4828 Query 101876 TGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGC 101934 ||| || ||| || || || ||||| |||| | || || || || |||||||| Sbjct 4827 TGAGC-AAGACAATGGCATGGTGGCAATGCCATCTGCGGTATATCCAAAGGGTTCCAAGC 4769 Query 101935 ACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAA 101994 |||| | |||| | ||| || || ||||| ||| || ||||||| || || || Sbjct 4768 GGACATAATAATCCGACGATCCGTTGGATTTGTGCGTATGGTTTCAATCACTTGCTTCAA 4709 Query 101995 TTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACCTTTATATTCTGCTCCGAAAT 102053 ||||||||| |||| ||| ||||||| || | | | ||||||| || || || | Sbjct 4708 TTGGTCAACACCTTGTCCGGTATAATCATCGTCGCAGGTC-TTATATTTGGCGCCAAAGT 4650 Query 102054 GCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAA 102113 | | ||| ||||| ||||| || || |||||||| | || | |||| ||||| Sbjct 4649 GACGCCATTGAAAACCATATACCGGACCAAGATCGGCCTCGCGACGATCATGGAAACCGC 4590 Query 102114 GTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCA-CGCCAGCTGCTGAT 102172 |||||| |||||| | | | || ||||||||||||| | || ||| Sbjct 4589 ATTTATCCAAAAATTCACGTGTGCTGTTGCCATCCCAAATGTGTATATTTTTCTCCTGCA 4530 Query 102173 AGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTC 102232 | ||| || ||| || || | | ||||||||||||||| || || || | | | Sbjct 4529 ACAGCTTAGC-GTCTGTTTTGCCACCCACAAACCACAACAGTTCCTCGACGACTGCACGC 4471 Query 102233 CAAAATACTCTCTTAGTAGTTAAAAGTGGAA 102263 ||||| || | ||| || || || | ||||| Sbjct 4470 CAAAAGACGCGCTTTGTTGTCAATAATGGAA 4440 >seq1420 Length=85926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 181/264 (69%), Gaps = 8/264 (3%) Strand=Plus/Plus Query 101693 TGATCTACATAGATGTGAGCA-TCTCCTATAGTATGGATAAACTCTCCAGGCACTAG--- 101748 |||| | |||| ||||| ||| || || ||| |||||| || || |||| | Sbjct 3900 TGATTTTCATAAATGTG-GCAGTCGCCACCAGTCCAGATAAAGTCACC---CACTTGCAA 3955 Query 101749 ATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCAC 101808 |||||| || |||| |||| ||||| | | |||||| ||||| ||||| ||||| Sbjct 3956 ATTAGTTTGCTGTGCAACCATGTGTGTTAATAATGCATAGCTGGCAATATTAAACGGCAC 4015 Query 101809 TCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGAC 101868 ||||| ||| || || || || || || || ||| | | ||||| | || Sbjct 4016 ACCTAAAAACATGTCTGCACTTCGCTGGTAAAGCTGGCAGCTTAACGCTCCATTAGCAAC 4075 Query 101869 ATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATT 101928 ||||| ||| |||| ||||||| ||| |||| |||||| | | | ||||||||| Sbjct 4076 GTAAAACTGAAATAATGCATGACATGGCATCAACGCCATTTGATCCAGTTGTGAAACATT 4135 Query 101929 CCAAGCACACATTAACATCCTTCT 101952 |||||| | || |||||| | ||| Sbjct 4136 CCAAGCGCTCACTAACATGCGTCT 4159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361165465268723