Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 652 0.0
seq4404 188 8e-43
>seq1169
Length=8375
Score = 652 bits (722), Expect = 0.0
Identities = 1271/1866 (68%), Gaps = 20/1866 (1%)
Strand=Plus/Plus
Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858
||||| | || ||||| || | | | ||| || || || |||| ||| ||||||||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918
||||| ||||| ||||| ||||| || || || | ||| |||| | ||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978
|| || | ||| ||||| | || || ||||| || ||||| ||||| || |||||||||
Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001
Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 53037
|||||||| | | ||| | ||| ||||| | ||||||||| || || || | |||
Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060
Query 53038 TTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGAT 53094
|| |||| |||| ||| |||||||| |||| | | || || |||| || ||
Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120
Query 53095 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 53154
||||||| ||| || | || |||||| | | | | || | ||||| |||||
Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180
Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214
||| |||||||| || || || | ||||| ||||| || || ||||| | || ||
Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240
Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 53274
||||||||||| |||||||| || || || || ||||| ||||| || | | |||
Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300
Query 53275 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 53334
||| | || || || || ||| |||| ||| ||||| ||| | || || ||
Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360
Query 53335 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA--TCCTACATAT 53392
| |||||| || || || || || | ||| ||||
Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418
Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452
|| || || || || | ||| ||||| ||||||||||| || ||||| | || ||||||
Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478
Query 53453 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 53512
|| ||||| || || | | ||||| | ||||| ||| ||| | ||||||
Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538
Query 53513 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 53572
| | ||| | || || || || || ||||| ||||| || ||||| | |||||||
Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598
Query 53573 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTT 53632
||||| || ||| ||| | | |||||||||||| || || || |||||||| || |||
Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658
Query 53633 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT--- 53689
| | || ||| || ||||| | || |||||| ||| | ||
Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718
Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749
|||||||| || || ||||| ||||||| ||| || || || | |||| | | | |
Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778
Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809
|||| || || || ||||| | |||||| || || ||||| || | ||||||||| ||
Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838
Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869
|| ||| | ||||| | ||| ||| | | || |||| || |||||||| | || | |
Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898
Query 53870 TCTATAATCGCTTTCCAGACGACACGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTC 53927
|| || || | ||| | || | ||||| || | | ||| | || ||
Sbjct 1899 TCAATTATAGAAAACCAAA-GAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTT 1956
Query 53928 TTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGAC 53987
||| ||| | ||| || |||||||||||| |||||||||| | | ||||| |
Sbjct 1957 GTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGC 2016
Query 53988 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 54047
||| || |||||||| | |||||||||| || |||| |||||||||||||| || |
Sbjct 2017 ATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGT 2076
Query 54048 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107
| |||||||||||||| ||||| ||| | | ||| ||||| || ||||| ||||| |
Sbjct 2077 CTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTT 2136
Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167
|||| ||||| | |||| | | ||| || | |||||| || || || || || | |
Sbjct 2137 TTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATG 2196
Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227
||||||||| || ||||| ||||||| |||| ||| |||||| ||||||| |
Sbjct 2197 CTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAA 2256
Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287
|||||| | || ||||| |||| |||||| || || || || | | || | ||||
Sbjct 2257 GCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCAC 2316
Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347
|||| | || || |||||| || || || ||| || || | || ||| |||
Sbjct 2317 GAATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTT 2376
Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTA 54406
|| | | | | ||||| |||||| ||| | | || |||||| |||||||| |
Sbjct 2377 CTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAA 2435
Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466
|| | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || |
Sbjct 2436 GATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAA 2495
Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCC 54525
||| ||||||||||| || || || || |||| || |||||| || | || || ||
Sbjct 2496 CGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACC 2554
Query 54526 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAG 54585
| || ||||||||||||||||| |||||||| ||| ||||||| ||||||||| |
Sbjct 2555 AATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAA 2614
Query 54586 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645
|| || ||| ||||||||||||||| ||||||||||| || ||| || || |||||
Sbjct 2615 TAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTA 2674
Query 54646 AATAAT 54651
||||||
Sbjct 2675 AATAAT 2680
Score = 102 bits (112), Expect = 1e-16
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837
||| |||||||||||||||||||||||||| || ||||| ||||||| |||||| |||||
Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674
Query 54838 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTC 54891
| || | |||||| || | ||||| ||||| |||| | | |||| || ||
Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728
>seq4404
Length=3800
Score = 188 bits (208), Expect = 8e-43
Identities = 409/603 (68%), Gaps = 12/603 (2%)
Strand=Plus/Minus
Query 23788 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 23844
||||||||||| |||| |||| |||| |||||| | |||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 23845 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 23904
||| ||||| || || ||| |||||||| || || || || || | || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 23905 CCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCA 23964
||||||| | ||||||| | || |||||| | | || | |||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 23965 ATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 24024
| ||| ||||||||||| |||||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 24025 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 24084
|||| || | || | || | ||||| || || || ||| || || | || ||
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 24085 --ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA-AACATGCGA 24141
|| ||| | ||| | || | | || ||||| | ||||| | |||| || |
Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731
Query 24142 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 24201
| || ||||||| ||| || || | ||||||||| ||||| || || | || ||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 24202 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 24261
| |||||||| || || |||||||| ||||||||||| ||| |||||| || || |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 24262 CTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC-GCTGTC-ATG-TATCCACT 24318
| || || ||||||||||||| ||| || || || || | | || ||| |||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551
Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378
| |||||||| ||||| ||| ||| ||||| ||||| || ||||| || ||||
Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491
Query 24379 AGT 24381
|||
Sbjct 2490 AGT 2488
Score = 129 bits (142), Expect = 7e-25
Identities = 193/274 (70%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||| | | ||| || || || |||| ||||||||||| || || | ||||| |||||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514
||||| || || ||||| || | ||||| || | || |||||| | || || ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574
| |||||||||||||| || || || || ||||| || ||||| || || |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634
|||| |||| || || ||| |||||| | | || || || | ||| ||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 24668
||| || |||||||| ||||||||||||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593577080741040
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