Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4404 174 2e-38 seq489 125 7e-24 >seq4404 Length=3800 Score = 174 bits (192), Expect = 2e-38 Identities = 187/245 (76%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 |||||| ||||| || |||||||| || ||||| || || ||||| |||||| || || Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192 Query 116713 CTGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771 |||| |||| | || |||||||| |||||||| ||||||| |||| || || | Sbjct 2193 TTGGGCTAAGCTT-ACTGATAACGAGCGTCATTTCATATCGCACGTGTTGGCTTTCTTTG 2251 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 | || ||| ||||| || || || ||| |||||||||||||| || || || || | Sbjct 2252 CTGCTTCCGATGGCATTGTGAATGAAAATTTGGTCGAGCGTTTCAGCCAAGAAGTTCAAG 2311 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 || | ||||| || |||||||| ||||| || || |||||||| || |||||||| |||| Sbjct 2312 TGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAAA 2371 Query 116892 TGTAT 116896 ||||| Sbjct 2372 TGTAT 2376 Score = 145 bits (160), Expect = 8e-30 Identities = 255/369 (69%), Gaps = 2/369 (1%) Strand=Plus/Plus Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 ||||| ||| | | | ||||| || || ||||||||| | |||||| |||||||| Sbjct 2577 TTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTT 2636 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 || |||| |||||||| |||||||| ||||| ||||| || | || ||| ||| || Sbjct 2637 GCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAA 2696 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT-TGCTGTTCAAGCATTT 117207 | || || | || || ||| | || || |||||||| |||| | ||||| | ||||| Sbjct 2697 TTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGC-TGTTCTTATGTTCCATCATTT 2755 Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267 ||||||||| || | | | ||| | | || ||| | | || || ||| || || Sbjct 2756 GGTGCAGCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGA 2815 Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327 |||| ||| | ||||| || ||||||| ||| | || | ||||| || ||| Sbjct 2816 GCAGGAATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGAT 2875 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 |||| |||| || ||||| ||||| || | || || | || || | || | ||| Sbjct 2876 GTCGGAATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAAT 2935 Query 117388 CTACAACAC 117396 ||||||||| Sbjct 2936 CTACAACAC 2944 >seq489 Length=77466 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| |||||||| ||||| ||||| || || ||||| ||| | || || || | Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | |||||||||||||| ||| | ||| Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || |||| || ||||| || ||||| || | ||||| || ||||||| Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444 Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||||| | || |||||| Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCAT 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515093789206480