Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 174 2e-38
seq489 125 7e-24
>seq4404
Length=3800
Score = 174 bits (192), Expect = 2e-38
Identities = 187/245 (76%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712
|||||| ||||| || |||||||| || ||||| || || ||||| |||||| || ||
Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192
Query 116713 CTGGGAGC-GCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCG 116771
|||| |||| | || |||||||| |||||||| ||||||| |||| || || |
Sbjct 2193 TTGGGCTAAGCTT-ACTGATAACGAGCGTCATTTCATATCGCACGTGTTGGCTTTCTTTG 2251
Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831
| || ||| ||||| || || || ||| |||||||||||||| || || || || |
Sbjct 2252 CTGCTTCCGATGGCATTGTGAATGAAAATTTGGTCGAGCGTTTCAGCCAAGAAGTTCAAG 2311
Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891
|| | ||||| || |||||||| ||||| || || |||||||| || |||||||| ||||
Sbjct 2312 TGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAAA 2371
Query 116892 TGTAT 116896
|||||
Sbjct 2372 TGTAT 2376
Score = 145 bits (160), Expect = 8e-30
Identities = 255/369 (69%), Gaps = 2/369 (1%)
Strand=Plus/Plus
Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088
||||| ||| | | | ||||| || || ||||||||| | |||||| ||||||||
Sbjct 2577 TTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTT 2636
Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148
|| |||| |||||||| |||||||| ||||| ||||| || | || ||| ||| ||
Sbjct 2637 GCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAA 2696
Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT-TGCTGTTCAAGCATTT 117207
| || || | || || ||| | || || |||||||| |||| | ||||| | |||||
Sbjct 2697 TTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGC-TGTTCTTATGTTCCATCATTT 2755
Query 117208 GGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGA 117267
||||||||| || | | | ||| | | || ||| | | || || ||| || ||
Sbjct 2756 GGTGCAGCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGA 2815
Query 117268 GCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGAT 117327
|||| ||| | ||||| || ||||||| ||| | || | ||||| || |||
Sbjct 2816 GCAGGAATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGAT 2875
Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387
|||| |||| || ||||| ||||| || | || || | || || | || | |||
Sbjct 2876 GTCGGAATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAAT 2935
Query 117388 CTACAACAC 117396
|||||||||
Sbjct 2936 CTACAACAC 2944
>seq489
Length=77466
Score = 125 bits (138), Expect = 7e-24
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||| |||||||| ||||| ||||| || || ||||| ||| | || || || |
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | |||||| || || | |||||||||||||| ||| | |||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|| || || || |||| || ||||| || ||||| || | ||||| || |||||||
Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444
Query 40867 AACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||||| | || ||||||
Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCAT 4417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515093789206480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |