Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq6120 120 2e-22 >seq6120 Length=7451 Score = 120 bits (132), Expect = 2e-22 Identities = 371/565 (66%), Gaps = 12/565 (2%) Strand=Plus/Minus Query 97072 TGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATC 97131 |||||||| || | ||||||| || ||||| || | | || ||||| || ||| Sbjct 5001 TGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGTTTAAGGCCCGTCACATGAGCTATC 4942 Query 97132 ATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCT 97191 || | || | || | ||| || |||||||| ||||| || || |||||||| || Sbjct 4941 ATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAGGGCACACCCAGACCCATATCTGCG 4882 Query 97192 GATCTTTGATATAACTGACAGGAAAGCTTTCCA----TCAC--ACACATAAAACTGACTC 97245 | |||||| | ||| || || | || || || | || || || ||| | Sbjct 4881 CTGCGTTGATACAGCTGGCAAGACAACTCACCGCGTGTCGTTGATACGTAGAATTGAG-C 4823 Query 97246 AATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || ||| || || || ||||| ||||| | || | ||| || |||||||| |||| Sbjct 4822 AAGACAATGGCATGGTGGCAATGCCATCTGCGGTATATCCAAAGGGTTCCAAGCGGACAT 4763 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | || | | ||| ||||| |||||| ||||||| | ||| | ||||| ||||| || Sbjct 4762 AATAATCCGACGATCCGTTGGATTTGTGCGTATGGTTTCAATCACTTGCTTCAATTGGTC 4703 Query 97365 AACGCCTTCTCCACCATAATTGTGCTTA-AGACCTTGATATTCTGCTCCAAAATGCCTCC 97423 ||| |||| ||| ||||| | | || ||| ||||| || ||||| || | || Sbjct 4702 AACACCTTGTCCGGTATAATCATCGTCGCAGGTCTT-ATATTTGGCGCCAAAGTGACGCC 4644 Query 97424 ATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTAT 97483 |||| || ||||| || || ||||| || | || | |||| |||||| |||| Sbjct 4643 ATTGAAAACCATATACCGGACCAAGATCGGCCTCGCGACGATCATGGAAACCGCATTTAT 4584 Query 97484 CTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGA-TGCTGCAAGCTCT 97542 | ||| | | | | || ||||||||||||| | | | |||||| || Sbjct 4583 CCAAAAATTCACGTGTGCTGTTGCCATCCCAAATGTGTATATTTTTCTCCTGCAACAGCT 4524 Query 97543 TTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAAT 97602 | || ||| || || | | ||||||||||| ||| || || || | | |||||| Sbjct 4523 TAGC-GTCTGTTTTGCCACCCACAAACCACAACAGTTCCTCGACGACTGCACGCCAAAAG 4465 Query 97603 ACTCTCTTAGTTGTTAAGAGAGGAA 97627 || | ||| ||||| || | |||| Sbjct 4464 ACGCGCTTTGTTGTCAATAATGGAA 4440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346701698728610