Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq489 105 6e-18 seq17788 98.7 9e-16 >seq489 Length=77466 Score = 105 bits (116), Expect = 6e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 ||||| || | || ||||| |||||||||||||| ||| | |||| |||| ||| | Sbjct 4412 ACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCG--GAAAGTGTGCGTCCATCTT 4469 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || || || || || |||| |||||||| || || || || |||||||| ||||| Sbjct 4470 CCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCT 4529 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | |||| |||||| | ||| ||||| | ||| | || | Sbjct 4530 GGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCT 4589 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| |||||||| || || |||||||| Sbjct 4590 TACCGGTGAGAGTTTTGACGAATATCTGCAT 4620 >seq17788 Length=7208 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| ||||| || | || || ||||| || || || ||||| | || || ||| Sbjct 2410 CAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATC 2351 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | |||||| ||||| |||| ||||| || ||||| ||||| || || || ||||| Sbjct 2350 TTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTC 2291 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||||| ||||||| |||||||| | || | || Sbjct 2290 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGT 2231 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || ||||| ||||||||||||||| Sbjct 2230 CTTACCCGTGAGGGTTTTAACAAAAATCTGCATG 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433727440251316