Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq12041 141 2e-28 >seq12041 Length=12732 Score = 141 bits (156), Expect = 2e-28 Identities = 223/317 (70%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 189430 AGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAA 189489 |||| |||||| ||| | |||||||||| |||| |||| | || || |||| || Sbjct 5067 AGCGCGAACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAA 5008 Query 189490 AATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACC 189549 ||||||| | ||||| || ||||||||||| || ||||||||||||||| | ||| || Sbjct 5007 AATGCATGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCC 4948 Query 189550 TGAAGACGCTTTGAGTTATAGTAT-CTATTTGAACAACAAGTACGAACTAGACGGCACGG 189608 || | |||||| || ||| || || || | ||||| |||| || | || Sbjct 4947 GGAGCAGGCTTTGGAATACGCTATACTGCTT-AATGATAAGTATAGCTTAGATGGAAGGG 4889 Query 189609 ATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGA 189668 |||| || || ||||| ||||| |||||||| ||| | || |||| || || ||| Sbjct 4888 ATCCGAATGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGG 4829 Query 189669 AAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAAT 189728 || || || | ||||| || | | |||||||||||| || | | |||| || | Sbjct 4828 CCGAGAGGCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGT 4769 Query 189729 TTGATGTTGCTGTATTT 189745 | ||||| |||| |||| Sbjct 4768 TCGATGTCGCTGCATTT 4752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922972082358920