Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq12041 141 2e-28
>seq12041
Length=12732
Score = 141 bits (156), Expect = 2e-28
Identities = 223/317 (70%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 189430 AGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAA 189489
|||| |||||| ||| | |||||||||| |||| |||| | || || |||| ||
Sbjct 5067 AGCGCGAACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAA 5008
Query 189490 AATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACC 189549
||||||| | ||||| || ||||||||||| || ||||||||||||||| | ||| ||
Sbjct 5007 AATGCATGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCC 4948
Query 189550 TGAAGACGCTTTGAGTTATAGTAT-CTATTTGAACAACAAGTACGAACTAGACGGCACGG 189608
|| | |||||| || ||| || || || | ||||| |||| || | ||
Sbjct 4947 GGAGCAGGCTTTGGAATACGCTATACTGCTT-AATGATAAGTATAGCTTAGATGGAAGGG 4889
Query 189609 ATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGA 189668
|||| || || ||||| ||||| |||||||| ||| | || |||| || || |||
Sbjct 4888 ATCCGAATGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGG 4829
Query 189669 AAGAAAGACCGATATTTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAAT 189728
|| || || | ||||| || | | |||||||||||| || | | |||| || |
Sbjct 4828 CCGAGAGGCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGT 4769
Query 189729 TTGATGTTGCTGTATTT 189745
| ||||| |||| ||||
Sbjct 4768 TCGATGTCGCTGCATTT 4752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922972082358920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |