Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4404 82.4 7e-11 >seq4404 Length=3800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 188/283 (66%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 16489 TTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATT 16548 ||||| | |||| ||||| || || |||| | ||||||||||| || || | ||| Sbjct 2415 TTCTTGGGAATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATT 2356 Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTA 16608 ||||| || || || || ||||| ||||| | || || | | ||| ||||| | Sbjct 2355 TTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCT 2296 Query 16609 AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTAT 16668 || | || | || ||||| || || || |||||| ||| ||||| || || | | Sbjct 2295 GAAACGCTCGACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACAC 2236 Query 16669 GTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGA 16728 ||| || |||| |||||||| | ||| || ||| || | || || || || Sbjct 2235 GTGCGATATGAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGA 2176 Query 16729 TAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 | ||| || || || || ||||| || || || | |||||| Sbjct 2175 CAGATCTACTTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462399418797800