Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 82.4 7e-11
>seq4404
Length=3800
Score = 82.4 bits (90), Expect = 7e-11
Identities = 188/283 (66%), Gaps = 0/283 (0%)
Strand=Plus/Minus
Query 16489 TTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATT 16548
||||| | |||| ||||| || || |||| | ||||||||||| || || | |||
Sbjct 2415 TTCTTGGGAATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATT 2356
Query 16549 CTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTA 16608
||||| || || || || ||||| ||||| | || || | | ||| ||||| |
Sbjct 2355 TTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCT 2296
Query 16609 AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTAT 16668
|| | || | || ||||| || || || |||||| ||| ||||| || || | |
Sbjct 2295 GAAACGCTCGACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACAC 2236
Query 16669 GTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGA 16728
||| || |||| |||||||| | ||| || ||| || | || || || ||
Sbjct 2235 GTGCGATATGAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGA 2176
Query 16729 TAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771
| ||| || || || || ||||| || || || | ||||||
Sbjct 2175 CAGATCTACTTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462399418797800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |