Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq6120 172 4e-38 >seq6120 Length=7451 Score = 172 bits (190), Expect = 4e-38 Identities = 391/579 (68%), Gaps = 18/579 (3%) Strand=Plus/Plus Query 20209 CGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAA 20268 |||| |||| ||| | ||||| || ||||| ||||||||| | || ||||| || || Sbjct 4604 CGTCGCGAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAA 4663 Query 20269 TATGTTGACATGA-ACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTAT 20327 ||| ||| || || ||||| |||||||| || || ||||| | | || || Sbjct 4664 TATAA-GACCTGCGACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGAT 4722 Query 20328 TAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAA 20387 | | || || || |||| || | | |||||| | | ||| |||||| || Sbjct 4723 TGAAACCATACGCACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCCTTT 4782 Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTA 20446 ||| | || ||||| ||||| ||||| ||| || ||| ||||| ||||| | | Sbjct 4783 GGATATACCGCAGATGGCATTGCCACCATGCCATTGTCT-TGCTCAATTCTACGTATCAA 4841 Query 20447 ATAA------TGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTG 20500 | ||| ||||| || || |||||||||| ||| |||||||| ||||||| Sbjct 4842 CGACACGCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTG 4901 Query 20501 TTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATT 20560 | || || || || || ||||| ||||||||||| ||||| || ||||| || | Sbjct 4902 TGCCCTTTAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCC 4961 Query 20561 TAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAG 20620 | ||| |||| ||||| || ||||| | || || || ||| | ||| ||| || |||| Sbjct 4962 TTAAACCGGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAG 5021 Query 20621 AACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTC 20680 |||| || || |||||| | || || ||| || |||||| | ||| ||||| | Sbjct 5022 AACCATTGAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGC 5081 Query 20681 GAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTG-TGTTAGAAGGTTATAAT 20739 | | || | | || | ||||||||| ||| || |||| |||| ||||| ||| Sbjct 5082 GTAAAGTGGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTA-TTGGTTACAAT 5140 Query 20740 CC---CCATAATTCAATTCCAATGGAAATGTCTGTTTAA 20775 || || || ||||| |||||| ||| | |||||| Sbjct 5141 CCATACCCGAA---AATTCAAATGGAGATGGCGGTTTAA 5176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399089262783985