Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 138 1e-27
>seq4404
Length=3800
Score = 138 bits (152), Expect = 1e-27
Identities = 329/495 (66%), Gaps = 2/495 (0%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915
||||| ||| |||| || | |||||| || || |||||| || || ||||| |
Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGCGT 3026
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
|||||||| | ||| |||| || || ||||| || || || ||||| || || ||||
Sbjct 3025 TGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTCC 2966
Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035
|| || |||||||| ||| | | | ||| | || ||||| | |||||
Sbjct 2965 ATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAGG 2906
Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095
| ||| || | ||||||||||||| ||||| | | ||||||||| || || || ||
Sbjct 2905 CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTTA 2846
Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155
|| || | | || ||| || ||||| | ||||| || ||||| || ||
Sbjct 2845 ACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTTCA 2786
Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 14214
||||| || || | ||| | | | ||| | || || | |||| ||||| ||
Sbjct 2785 ATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAAGTC 2727
Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274
||| || | || ||||| | ||| | ||| || || |||||||| || ||||| |
Sbjct 2726 ACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATAAG 2667
Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334
|| ||||| || | |||||| || | || || || ||||||||| ||||| ||
Sbjct 2666 GCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCGAC 2607
Query 14335 TGCAGCAAACGCTAT 14349
|||||||| || ||
Sbjct 2606 CGCAGCAAAGGCAAT 2592
Score = 105 bits (116), Expect = 6e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553
|||||||||||| ||||| | |||||||| || || || || ||||| || || | ||
Sbjct 2379 GCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGC 2320
Query 14554 TTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613
|| | | ||| || ||| | || | ||| ||||||||||||| || || |||||
Sbjct 2319 CTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATC 2260
Query 14614 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673
||| ||||| || ||||| | || || || | |||| | || | || ||
Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200
Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724
|||||| | || ||||| || ||||||||||| ||||||||||| ||
Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482228191051640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |