Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4404 138 1e-27 >seq4404 Length=3800 Score = 138 bits (152), Expect = 1e-27 Identities = 329/495 (66%), Gaps = 2/495 (0%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||| ||| |||| || | |||||| || || |||||| || || ||||| | Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGCGT 3026 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| | ||| |||| || || ||||| || || || ||||| || || |||| Sbjct 3025 TGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTCC 2966 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 || || |||||||| ||| | | | ||| | || ||||| | ||||| Sbjct 2965 ATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAGG 2906 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 | ||| || | ||||||||||||| ||||| | | ||||||||| || || || || Sbjct 2905 CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTTA 2846 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 || || | | || ||| || ||||| | ||||| || ||||| || || Sbjct 2845 ACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTTCA 2786 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 14214 ||||| || || | ||| | | | ||| | || || | |||| ||||| || Sbjct 2785 ATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAAGTC 2727 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | || ||||| | ||| | ||| || || |||||||| || ||||| | Sbjct 2726 ACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATAAG 2667 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 || ||||| || | |||||| || | || || || ||||||||| ||||| || Sbjct 2666 GCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCGAC 2607 Query 14335 TGCAGCAAACGCTAT 14349 |||||||| || || Sbjct 2606 CGCAGCAAAGGCAAT 2592 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14494 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGC 14553 |||||||||||| ||||| | |||||||| || || || || ||||| || || | || Sbjct 2379 GCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGC 2320 Query 14554 TTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14613 || | | ||| || ||| | || | ||| ||||||||||||| || || ||||| Sbjct 2319 CTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATC 2260 Query 14614 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT 14673 ||| ||||| || ||||| | || || || | |||| | || | || || Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200 Query 14674 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||| | || ||||| || ||||||||||| ||||||||||| || Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482228191051640