Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 479 3e-130
seq4404 163 3e-35
seq17788 123 2e-23
seq489 102 7e-17
>seq1169
Length=8375
Score = 479 bits (530), Expect = 3e-130
Identities = 1272/1935 (66%), Gaps = 23/1935 (1%)
Strand=Plus/Plus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||||||| ||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225
|| || ||||| ||||| | ||||| ||||| || |||||||| |||||| | ||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 22226 AAGTC--CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283
| | |||||| | ||||| ||||| || || || || || ||||||| ||| || |
Sbjct 942 TCGGCGACATGTATA--TTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAG 999
Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343
|||| ||||| || | || || ||||| || || || || | | |||| |
Sbjct 1000 CCATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACAT 1059
Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403
|| || || | ||| || || | || || | | | || |||||| |
Sbjct 1060 CTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCA 1119
Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463
| ||| | ||||||| | | | || ||||| | | || | |||| || ||||
Sbjct 1120 TATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTT 1179
Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523
||||||| || || || || | | ||| || || || ||| | ||||| || ||||
Sbjct 1180 GAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATT 1239
Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583
|||| ||||||| || ||||| || ||||| || ||||| || || | || || || |
Sbjct 1240 CATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAAT 1299
Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA--CCAGTCCCACAGATCGGA 22641
|||| | || | |||| ||| ||| ||| | || | ||| ||||||| || |
Sbjct 1300 TTCTTACTCCATACTTTTGAATCTTAAGCTTTA--ATTGTTGCCAATCCCACAAATTCGT 1357
Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701
|| | || ||||||| || ||||| | | || || ||||| || ||
Sbjct 1358 TGGTTTT---TTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTC 1414
Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761
||||| || || |||||||| | | || ||||| || || || || || | | |||
Sbjct 1415 ATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTA 1474
Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821
|||||| || || || |||| | || || ||| | ||||||| || ||
Sbjct 1475 ATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATA 1534
Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881
|||||| | | | || || || | ||||||||||| || || || || || | | |
Sbjct 1535 ACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCT 1594
Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941
|| || ||| | ||||| |||||||||| |||| || ||| || | || |
Sbjct 1595 CAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAG 1654
Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC---CCGA 22998
|||| || || |||||||||| || || || || ||||
Sbjct 1655 ATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGA 1714
Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058
| ||| ||||| | || | ||| ||||| || | ||||||||| || | || |||
Sbjct 1715 --GGACA-CAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGG 1771
Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118
| | || ||||||||||| || |||| ||| || || || || ||||| | |||
Sbjct 1772 TGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTG 1831
Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178
||||||||||||| ||| || ||||| || | | ||| || || ||||| || || ||
Sbjct 1832 TTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTAC 1891
Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-C 23237
|| | || || || | ||| | || || || | || || || | | | |
Sbjct 1892 TTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCT-ACTTGCGCGAC 1950
Query 23238 CTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGC 23297
|||||| || || |||| || ||| ||||| ||| |||| || || ||||
Sbjct 1951 CTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGC 2010
Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357
| || ||| |||||||| || |||| | || | || || ||| ||||||
Sbjct 2011 CAGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAA 2070
Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417
|||| || || ||||| |||||||| || | || || || | || || || || |
Sbjct 2071 AAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAG 2130
Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477
| || ||||| | |||||| || || || | ||| |||||||| ||||| | |||| |
Sbjct 2131 TATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAG 2190
Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537
|||| || || || |||||| || || ||||| || || || || || || | |
Sbjct 2191 CAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAA 2250
Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597
|||| ||||| ||||| || || || || | || |||| | | ||| |
Sbjct 2251 CTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCT 2310
Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657
| || |||| | ||||| | | |||||| || ||| | ||||| ||||||||||| |
Sbjct 2311 TAGCACGAATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCAC 2370
Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717
|||||| | || | | ||||| || || ||| || | | | | ||||
Sbjct 2371 ATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAAAC 2430
Query 23718 ACGAAGACATTTGCG--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775
| ||||| | ||||| | | || | || || | |||| || || || |||||
Sbjct 2431 ATGAAGATAGTTGCGGACGATTGG--TTGCAGCAGCAAACAAAGTAGGTGATGCATGCGT 2488
Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835
||||| | | ||| | |||||| || || || || || |||||||| ||||| |||||
Sbjct 2489 GAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCGTG 2548
Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895
|||||| || || || ||||| | ||||| |||||||||||| | | ||||| ||
Sbjct 2549 TATACCAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTAT 2608
Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955
||| || | ||| || |||| || ||||||||||||||||||| ||| ||| |||||
Sbjct 2609 TTTTAATAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACG 2668
Query 23956 ATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAA 24015
|||| | || || ||||| || || | |||||| | || ||| ||||||||
Sbjct 2669 GTCGTAAATAATTGCGGAATTTAAGCGATCGGCATTGCTCTTTACGACGTTATAATGAAA 2728
Query 24016 ATTCGATATCATCGG 24030
| ||||| ||| ||
Sbjct 2729 TTCCGATACCATTGG 2743
>seq4404
Length=3800
Score = 163 bits (180), Expect = 3e-35
Identities = 185/246 (75%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 57587 AAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGA 57646
||||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||| ||
Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192
Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706
||||| | || | || ||| | |||| || ||||||||||| || || ||
Sbjct 2193 TTGGGCTAAGCTTACTGATAACGAGCGTCATTTCATATCGCACGTGTTGGCTTTCTTTGC 2252
Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAA 57764
|| |||||||| ||||| || || |||||||||| || ||||| |||||||| |||
Sbjct 2253 TGCTTCCGATGGCATTGTGAATGAAAATTTGGTCG--AGCGTTTCAGCCAAGAAGTTCAA 2310
Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824
||||| ||||| | ||||| || || || ||| | ||||| ||||| ||||| || |||
Sbjct 2311 GTGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAA 2370
Query 57825 ATGTAT 57830
||||||
Sbjct 2371 ATGTAT 2376
Score = 150 bits (166), Expect = 2e-31
Identities = 346/518 (67%), Gaps = 10/518 (2%)
Strand=Plus/Plus
Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022
|||| ||||| | || || || || || ||||| || ||||||||| ||||| |||
Sbjct 2577 TTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTT 2636
Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082
||| | || |||||| |||||||||| ||||| ||||| || | || || ||| ||
Sbjct 2637 GCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAA 2696
Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142
|| || ||||| || || ||| | || ||| ||||| || |||| | ||| |
Sbjct 2697 TTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGCTGTTCTTATGTTCCATCATTTG 2756
Query 58143 GTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202
|| | || || || || || | || || || | ||||| ||| || ||
Sbjct 2757 GTGCAGCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAG 2816
Query 58203 AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATG 58262
| || || | ||||| || | ||||| | || | || ||||| | | |||||
Sbjct 2817 CAGGAATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATG 2876
Query 58263 TCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTC 58320
|| | || ||||||||||| || || | || | | ||||| | ||| | ||
Sbjct 2877 TCGGAATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATC 2936
Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380
|||||||| || ||||| || || ||| | |||| ||||| || |||||||| |
Sbjct 2937 --TACAACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGA 2994
Query 58381 ACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGT 58440
|||||||||| |||||||| ||||||||||| || || ||| ||||
Sbjct 2995 ACTTTTTCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGTAATG---TCTAACCGTC 3051
Query 58441 TGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAA 58478
| || ||| |||| ||||||||||||| |||||||
Sbjct 3052 TAGACAACG---TTTTTACTTTGGATGCTGACTTTTAA 3086
>seq17788
Length=7208
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| ||||| || || || || || || || || ||||| | || || |||||
Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| | |||||| |||||| | || |||||| ||||| | || || ||
Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATT 31367
|| || |||||||| || |||||||||||||||||||| || | ||| | ||||
Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCT--CTGATT 2372
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
|||| || || |||||||||||| | ||| ||||
Sbjct 2373 ATAATATCCAGAAAGAATCGACTTTGCATTTGGT 2406
>seq489
Length=77466
Score = 102 bits (112), Expect = 7e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || ||||| || || || || || ||| | || ||||| ||
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| | || |||||| || ||| | || || |||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|| |||||||| || || || ||||| || ||||||| | | | || | ||| ||
Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGA-TGGACGCACACTTTCCGACTA 4445
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||||||||| || ||||| || ||| ||||||| | ||| | || ||||
Sbjct 4444 CAACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTA 4392
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445657894886160
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