Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1169 479 3e-130 seq4404 163 3e-35 seq17788 123 2e-23 seq489 102 7e-17 >seq1169 Length=8375 Score = 479 bits (530), Expect = 3e-130 Identities = 1272/1935 (66%), Gaps = 23/1935 (1%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 ||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||||||| || Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || || ||||| ||||| | ||||| ||||| || |||||||| |||||| | || Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941 Query 22226 AAGTC--CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | |||||| | ||||| ||||| || || || || || ||||||| ||| || | Sbjct 942 TCGGCGACATGTATA--TTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAG 999 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| ||||| || | || || ||||| || || || || | | |||| | Sbjct 1000 CCATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACAT 1059 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || || || | ||| || || | || || | | | || |||||| | Sbjct 1060 CTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCA 1119 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | ||| | ||||||| | | | || ||||| | | || | |||| || |||| Sbjct 1120 TATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTT 1179 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 ||||||| || || || || | | ||| || || || ||| | ||||| || |||| Sbjct 1180 GAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATT 1239 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 |||| ||||||| || ||||| || ||||| || ||||| || || | || || || | Sbjct 1240 CATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAAT 1299 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGA--CCAGTCCCACAGATCGGA 22641 |||| | || | |||| ||| ||| ||| | || | ||| ||||||| || | Sbjct 1300 TTCTTACTCCATACTTTTGAATCTTAAGCTTTA--ATTGTTGCCAATCCCACAAATTCGT 1357 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || | || ||||||| || ||||| | | || || ||||| || || Sbjct 1358 TGGTTTT---TTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTC 1414 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 ||||| || || |||||||| | | || ||||| || || || || || | | ||| Sbjct 1415 ATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTA 1474 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCAT 22821 |||||| || || || |||| | || || ||| | ||||||| || || Sbjct 1475 ATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATA 1534 Query 22822 ACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTT 22881 |||||| | | | || || || | ||||||||||| || || || || || | | | Sbjct 1535 ACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCT 1594 Query 22882 CAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAA 22941 || || ||| | ||||| |||||||||| |||| || ||| || | || | Sbjct 1595 CAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAG 1654 Query 22942 GTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGC---CCGA 22998 |||| || || |||||||||| || || || || |||| Sbjct 1655 ATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGA 1714 Query 22999 TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTT 23058 | ||| ||||| | || | ||| ||||| || | ||||||||| || | || ||| Sbjct 1715 --GGACA-CAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGG 1771 Query 23059 GGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT 23118 | | || ||||||||||| || |||| ||| || || || || ||||| | ||| Sbjct 1772 TGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTG 1831 Query 23119 CTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGAC 23178 ||||||||||||| ||| || ||||| || | | ||| || || ||||| || || || Sbjct 1832 TTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTAC 1891 Query 23179 CTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-C 23237 || | || || || | ||| | || || || | || || || | | | | Sbjct 1892 TTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCT-ACTTGCGCGAC 1950 Query 23238 CTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGC 23297 |||||| || || |||| || ||| ||||| ||| |||| || || |||| Sbjct 1951 CTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGC 2010 Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 | || ||| |||||||| || |||| | || | || || ||| |||||| Sbjct 2011 CAGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAA 2070 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 |||| || || ||||| |||||||| || | || || || | || || || || | Sbjct 2071 AAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAG 2130 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 | || ||||| | |||||| || || || | ||| |||||||| ||||| | |||| | Sbjct 2131 TATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAG 2190 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 |||| || || || |||||| || || ||||| || || || || || || | | Sbjct 2191 CAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAA 2250 Query 23538 CTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTT 23597 |||| ||||| ||||| || || || || | || |||| | | ||| | Sbjct 2251 CTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCT 2310 Query 23598 TTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGC 23657 | || |||| | ||||| | | |||||| || ||| | ||||| ||||||||||| | Sbjct 2311 TAGCACGAATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCAC 2370 Query 23658 ATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAAC 23717 |||||| | || | | ||||| || || ||| || | | | | |||| Sbjct 2371 ATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAAAC 2430 Query 23718 ACGAAGACATTTGCG--CTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 | ||||| | ||||| | | || | || || | |||| || || || ||||| Sbjct 2431 ATGAAGATAGTTGCGGACGATTGG--TTGCAGCAGCAAACAAAGTAGGTGATGCATGCGT 2488 Query 23776 AAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||||| | | ||| | |||||| || || || || || |||||||| ||||| ||||| Sbjct 2489 GAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCGTG 2548 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 |||||| || || || ||||| | ||||| |||||||||||| | | ||||| || Sbjct 2549 TATACCAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTAT 2608 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 ||| || | ||| || |||| || ||||||||||||||||||| ||| ||| ||||| Sbjct 2609 TTTTAATAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACG 2668 Query 23956 ATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAA 24015 |||| | || || ||||| || || | |||||| | || ||| |||||||| Sbjct 2669 GTCGTAAATAATTGCGGAATTTAAGCGATCGGCATTGCTCTTTACGACGTTATAATGAAA 2728 Query 24016 ATTCGATATCATCGG 24030 | ||||| ||| || Sbjct 2729 TTCCGATACCATTGG 2743 >seq4404 Length=3800 Score = 163 bits (180), Expect = 3e-35 Identities = 185/246 (75%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 57587 AAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGA 57646 ||||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||| || Sbjct 2133 AAAGGCAGAGGCATCATTCTGGACAGTTGAGGAAGTAGATCTGTCGAAGGACTTGACAGA 2192 Query 57647 TTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGC 57706 ||||| | || | || ||| | |||| || ||||||||||| || || || Sbjct 2193 TTGGGCTAAGCTTACTGATAACGAGCGTCATTTCATATCGCACGTGTTGGCTTTCTTTGC 2252 Query 57707 CGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAA 57764 || |||||||| ||||| || || |||||||||| || ||||| |||||||| ||| Sbjct 2253 TGCTTCCGATGGCATTGTGAATGAAAATTTGGTCG--AGCGTTTCAGCCAAGAAGTTCAA 2310 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 ||||| ||||| | ||||| || || || ||| | ||||| ||||| ||||| || ||| Sbjct 2311 GTGACTGAGGCACGTTGCTTCTATGGCTTCCAAATTGCCATGGAAAATGTGCACTCCGAA 2370 Query 57825 ATGTAT 57830 |||||| Sbjct 2371 ATGTAT 2376 Score = 150 bits (166), Expect = 2e-31 Identities = 346/518 (67%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTT 58022 |||| ||||| | || || || || || ||||| || ||||||||| ||||| ||| Sbjct 2577 TTCGGTGAGAGAATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTT 2636 Query 58023 GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 ||| | || |||||| |||||||||| ||||| ||||| || | || || ||| || Sbjct 2637 GCGTCCATCTTTTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAA 2696 Query 58083 TTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATT 58142 || || ||||| || || ||| | || ||| ||||| || |||| | ||| | Sbjct 2697 TTAATTTCGCGTGATGAAGGTTTACACTGTGACTTTGCTGTTCTTATGTTCCATCATTTG 2756 Query 58143 GTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAA 58202 || | || || || || || | || || || | ||||| ||| || || Sbjct 2757 GTGCAGCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAG 2816 Query 58203 AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATG 58262 | || || | ||||| || | ||||| | || | || ||||| | | ||||| Sbjct 2817 CAGGAATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATG 2876 Query 58263 TCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTC 58320 || | || ||||||||||| || || | || | | ||||| | ||| | || Sbjct 2877 TCGGAATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATC 2936 Query 58321 ATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAA 58380 |||||||| || ||||| || || ||| | |||| ||||| || |||||||| | Sbjct 2937 --TACAACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGA 2994 Query 58381 ACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGT 58440 |||||||||| |||||||| ||||||||||| || || ||| |||| Sbjct 2995 ACTTTTTCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGTAATG---TCTAACCGTC 3051 Query 58441 TGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAA 58478 | || ||| |||| ||||||||||||| ||||||| Sbjct 3052 TAGACAACG---TTTTTACTTTGGATGCTGACTTTTAA 3086 >seq17788 Length=7208 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| ||||| || || || || || || || || ||||| | || || ||||| Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | |||||| |||||| | || |||||| ||||| | || || || Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATT 31367 || || |||||||| || |||||||||||||||||||| || | ||| | |||| Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCT--CTGATT 2372 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||| || || |||||||||||| | ||| |||| Sbjct 2373 ATAATATCCAGAAAGAATCGACTTTGCATTTGGT 2406 >seq489 Length=77466 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || || || ||| | || ||||| || Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||| || ||| | || || ||| Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || |||||||| || || || ||||| || ||||||| | | | || | ||| || Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGA-TGGACGCACACTTTCCGACTA 4445 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||||| || ||||| || ||| ||||||| | ||| | || |||| Sbjct 4444 CAACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTA 4392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445657894886160