Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq6120 181 2e-40 seq4404 132 1e-25 seq1169 84.2 4e-11 >seq6120 Length=7451 Score = 181 bits (200), Expect = 2e-40 Identities = 408/606 (67%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||| | | ||| || || ||||| | |||||| | | ||||| |||||||| || Sbjct 4466 TTTTGGCGTGCAGTCGTCGAGGAACTGTTGTGGTTTGTGGGTGGCAAAACAGACGCTAAG 4525 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 ||| |||| || |||||||| ||| | | || | | || ||||||||||| Sbjct 4526 CTGTTGCAGGAGAAAAATATACACATTTGGGATGGCAACAGCACACGTGAATTTTTGGAT 4585 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 | | || || | ||| | |||| ||| | || || ||||| || || |||||| Sbjct 4586 AAATGCGGTTTCCATGATCGTCGCGAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGG 4645 Query 35429 CGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGAT 35488 ||||| ||||| || ||||| | ||||| |||||||| ||| | ||| |||| Sbjct 4646 CGTCACTTTGGCGCCAAATATAAGACCTGCGACGATGATTATACCGGACAAGGTGTTGAC 4705 Query 35489 CAATTG-GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTAT 35547 |||||| ||| | | || ||| | | ||||||| ||| | |||| ||||| Sbjct 4706 CAATTGAAGCAAGTGATTGAA-ACCATACGCACAAATCCAACGGATCGTCGGATTATTAT 4764 Query 35548 GACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGAC-TG 35606 | | || ||||| ||| ||||| | | | ||||| | || |||||||| || | || Sbjct 4765 GTCCGCTTGGAACCCTTTGGATATACCGCAGATGGCATTGCCACCATGCCA-TTGTCTTG 4823 Query 35607 CTCAATTTTATGT------GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCG 35660 ||||||| || || | | || || ||||| |||||| ||||||| || |||| Sbjct 4824 CTCAATTCTACGTATCAACGACACGCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCG 4883 Query 35661 GAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGA 35720 |||| | || |||| |||||||| || || || || || | || || || | ||| Sbjct 4884 CAGATATGGGTCTGGGTGTGCCCTTTAACATCGCCTCGTATGCACTGCTTACGTACATGA 4943 Query 35721 TGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACA 35780 | || | || ||| || ||||||||||| || | | ||| ||||| || || || Sbjct 4944 TAGCTCATGTGACGGGCCTTAAACCGGGAGACTTCGTTCACACGCTTGGCGATGCTCATG 5003 Query 35781 TTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGT--CCCTAGACCATT 35838 | || | || |||||| || || ||| | |||| || ||||| ||| ||||||| Sbjct 5004 TCTACAGTAACCACATAGAACCATTGAAGGAACAGT--TGGCGCGTCACCCACGACCATT 5061 Query 35839 CCCTAA 35844 ||| || Sbjct 5062 CCCGAA 5067 >seq4404 Length=3800 Score = 132 bits (146), Expect = 1e-25 Identities = 297/444 (67%), Gaps = 3/444 (1%) Strand=Plus/Plus Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 |||| ||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 2588 AATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTT 2647 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 ||| | ||||| | || || |||||||| | || | ||||||||| || ||||| | Sbjct 2648 TTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCG 2707 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC 102093 || |||||| | || | |||||||| || | || || | ||| || | Sbjct 2708 TGATGAAGGTTTACACTGTGACTTTGC-TG--TTCTTATGTTCCATCATTTGGTGCAGCG 2764 Query 102094 CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 ||| | | ||| | ||| ||||||| | | || || ||| ||| || || ||||| Sbjct 2765 TCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGAATT 2824 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 | || | | | |||| ||||| | | || ||||| || || ||||| | || Sbjct 2825 CTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGAATA 2884 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273 ||||| ||||| || ||| ||| | |||||| | || | | || ||| || Sbjct 2885 TATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATCTACAACAC 2944 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 | || || ||| |||||||||| ||||| || || ||||| |||||||| || Sbjct 2945 AAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTTTTCGA 3004 Query 102334 AAAGAGAGTCGCCGAGTATCAACG 102357 || | ||| | ||| |||||||| Sbjct 3005 GAAAAAAGTAGGCGAATATCAACG 3028 >seq1169 Length=8375 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 94167 CACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACT 94226 ||||||| | || | || || || ||||||||||| || ||| |||| || | || Sbjct 1718 CACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGA 1777 Query 94227 GTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTT 94286 || | |||||||| ||||| ||||| | || ||| |||| ||||||| |||||| Sbjct 1778 ATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTT 1837 Query 94287 AGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 |||||||| | ||| ||||| ||| ||| || || |||||||| Sbjct 1838 GCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTC 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989337100956715