Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq6120 181 2e-40
seq4404 132 1e-25
seq1169 84.2 4e-11
>seq6120
Length=7451
Score = 181 bits (200), Expect = 2e-40
Identities = 408/606 (67%), Gaps = 14/606 (2%)
Strand=Plus/Plus
Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308
|| ||| | | ||| || || ||||| | |||||| | | ||||| |||||||| ||
Sbjct 4466 TTTTGGCGTGCAGTCGTCGAGGAACTGTTGTGGTTTGTGGGTGGCAAAACAGACGCTAAG 4525
Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368
||| |||| || |||||||| ||| | | || | | || |||||||||||
Sbjct 4526 CTGTTGCAGGAGAAAAATATACACATTTGGGATGGCAACAGCACACGTGAATTTTTGGAT 4585
Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428
| | || || | ||| | |||| ||| | || || ||||| || || ||||||
Sbjct 4586 AAATGCGGTTTCCATGATCGTCGCGAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGG 4645
Query 35429 CGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGAT 35488
||||| ||||| || ||||| | ||||| |||||||| ||| | ||| ||||
Sbjct 4646 CGTCACTTTGGCGCCAAATATAAGACCTGCGACGATGATTATACCGGACAAGGTGTTGAC 4705
Query 35489 CAATTG-GCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTAT 35547
|||||| ||| | | || ||| | | ||||||| ||| | |||| |||||
Sbjct 4706 CAATTGAAGCAAGTGATTGAA-ACCATACGCACAAATCCAACGGATCGTCGGATTATTAT 4764
Query 35548 GACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGAC-TG 35606
| | || ||||| ||| ||||| | | | ||||| | || |||||||| || | ||
Sbjct 4765 GTCCGCTTGGAACCCTTTGGATATACCGCAGATGGCATTGCCACCATGCCA-TTGTCTTG 4823
Query 35607 CTCAATTTTATGT------GGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCG 35660
||||||| || || | | || || ||||| |||||| ||||||| || ||||
Sbjct 4824 CTCAATTCTACGTATCAACGACACGCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCG 4883
Query 35661 GAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGA 35720
|||| | || |||| |||||||| || || || || || | || || || | |||
Sbjct 4884 CAGATATGGGTCTGGGTGTGCCCTTTAACATCGCCTCGTATGCACTGCTTACGTACATGA 4943
Query 35721 TGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACA 35780
| || | || ||| || ||||||||||| || | | ||| ||||| || || ||
Sbjct 4944 TAGCTCATGTGACGGGCCTTAAACCGGGAGACTTCGTTCACACGCTTGGCGATGCTCATG 5003
Query 35781 TTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTGCCGCGT--CCCTAGACCATT 35838
| || | || |||||| || || ||| | |||| || ||||| ||| |||||||
Sbjct 5004 TCTACAGTAACCACATAGAACCATTGAAGGAACAGT--TGGCGCGTCACCCACGACCATT 5061
Query 35839 CCCTAA 35844
||| ||
Sbjct 5062 CCCGAA 5067
>seq4404
Length=3800
Score = 132 bits (146), Expect = 1e-25
Identities = 297/444 (67%), Gaps = 3/444 (1%)
Strand=Plus/Plus
Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973
|||| ||||||||||||| || || || || ||||||||||| || || ||||| ||
Sbjct 2588 AATTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTT 2647
Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033
||| | ||||| | || || |||||||| | || | ||||||||| || ||||| |
Sbjct 2648 TTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCG 2707
Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC 102093
|| |||||| | || | |||||||| || | || || | ||| || |
Sbjct 2708 TGATGAAGGTTTACACTGTGACTTTGC-TG--TTCTTATGTTCCATCATTTGGTGCAGCG 2764
Query 102094 CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153
||| | | ||| | ||| ||||||| | | || || ||| ||| || || |||||
Sbjct 2765 TCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGAATT 2824
Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213
| || | | | |||| ||||| | | || ||||| || || ||||| | ||
Sbjct 2825 CTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGAATA 2884
Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGT 102273
||||| ||||| || ||| ||| | |||||| | || | | || ||| ||
Sbjct 2885 TATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATCTACAACAC 2944
Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333
| || || ||| |||||||||| ||||| || || ||||| |||||||| ||
Sbjct 2945 AAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTTTTCGA 3004
Query 102334 AAAGAGAGTCGCCGAGTATCAACG 102357
|| | ||| | ||| ||||||||
Sbjct 3005 GAAAAAAGTAGGCGAATATCAACG 3028
>seq1169
Length=8375
Score = 84.2 bits (92), Expect = 4e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 94167 CACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACT 94226
||||||| | || | || || || ||||||||||| || ||| |||| || | ||
Sbjct 1718 CACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGA 1777
Query 94227 GTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTT 94286
|| | |||||||| ||||| ||||| | || ||| |||| ||||||| ||||||
Sbjct 1778 ATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTT 1837
Query 94287 AGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTC 94337
|||||||| | ||| ||||| ||| ||| || || ||||||||
Sbjct 1838 GCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTC 1888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989337100956715
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |