Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1169 652 0.0 seq4404 161 1e-34 >seq1169 Length=8375 Score = 652 bits (722), Expect = 0.0 Identities = 1276/1874 (68%), Gaps = 18/1874 (1%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||| | || ||||| || | | | ||| || || || |||| ||| |||||||| Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| ||||| ||||| || || || | ||| |||| | || Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || || | ||| ||||| | || || ||||| || ||||| ||||| || ||||||||| Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275 |||||||| | | ||| | ||| ||||| | ||||||||| || || || | ||| Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060 Query 62276 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332 || |||| |||| ||| ||||| || |||| | | || || |||| || || Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120 Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392 ||||||| ||| || | || |||||| | | | | || ||||||| ||||| Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180 Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452 || |||||||| || || || | ||||| ||||| || || ||||| | || || Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240 Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512 ||||||||||| |||||||| || || || || ||||| ||||| || | | ||| Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300 Query 62513 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG 62572 ||| | || || || || ||| |||| |||| ||||| ||| | || || || Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360 Query 62573 TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGA--TCCTACATAT 62630 | ||||||||| || || || || || | ||| |||| Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418 Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690 || ||||| || || | ||| ||||| |||| |||||| || ||||| | || |||||| Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478 Query 62691 ATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 62750 || |||||||| || | | ||||| | ||||| ||| ||| | |||||| Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538 Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810 | | ||| | || || || || || ||||| ||||| || ||||| | ||||||| Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598 Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870 ||||| || ||| ||| | | |||||||||||| || || || |||||||| |||||| Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658 Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT--- 62927 | | || ||| || ||||| | || |||||| || || Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718 Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 |||||||| || || |||| ||||||| ||| || || || | |||| | | | | Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| || || || ||||| | |||||| || || || || || | ||||||||| || Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || ||| | ||||| | ||| ||| | | || ||||||| |||||||| | |||| | Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898 Query 63108 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCT 63166 || || || | ||| | | | || || ||| | | ||| |||| || Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957 Query 63167 TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACA 63226 ||| ||| ||| || ||| |||||||| |||||||||| | | | ||| || Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017 Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 || || |||||||| | |||||||||| || |||| |||||||||||||| || || Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077 Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346 |||||||||||||| ||||| ||| | | ||| ||||| || ||||| ||||| || Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137 Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406 ||| ||||| | |||| | | ||| || | |||||| || || || || || || | | Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197 Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466 |||||||| || ||||| ||||||| |||| ||| |||||| ||||||| | Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257 Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526 |||||| | || || || ||| ||||||| || || || || | || | ||||| Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317 Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586 ||| | || || ||||||||| || || ||| || || | || ||| ||| Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377 Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAG 63645 || | | | | ||||||||||| ||| | | || |||||| |||||||| || Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436 Query 63646 ACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705 | | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || | Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496 Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCT 63764 ||| ||||||||||| || || || || |||| || |||||| || | || || || Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555 Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 | || ||||||||||||||||| |||||||| ||| | || || ||||||||| || Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884 || || ||| ||||||||||||||| ||||||||||| || ||| || || |||||| Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675 Query 63885 ATAATAACCGAATT 63898 ||||| | ||||| Sbjct 2676 ATAATTGCGGAATT 2689 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075 ||| |||||||| |||||||||||||||| || ||||| ||||||| |||||| ||||| Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129 | || | |||||| || | ||||| ||||| ||||| | | |||| || || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728 >seq4404 Length=3800 Score = 161 bits (178), Expect = 1e-34 Identities = 403/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Minus Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 33291 ||||||||||| |||| |||| |||| |||||| | |||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351 ||| ||||| || || ||| |||||||| || || || || |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411 ||||||| || ||||| | ||||| ||||| | || | |||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471 | ||| ||||| || || |||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA- 33530 |||| || | || | || | ||||| || || || || || | | || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 33531 -AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCA-AACATGCGA 33588 ||| ||| | ||| | || | || | ||||| | ||||| | |||| || | Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731 Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648 | || ||||| | ||| || || | ||||||||| || || || || | || |||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708 | |||||||| || || |||||||| ||||| || || || |||||| || || | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATG-TATCCACT 33765 | || |||||||||||||||| |||||| || || || | | || ||| ||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 | |||||||| ||||| ||| ||| ||||| || || || ||||| || |||| Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491 Query 33826 AGT 33828 ||| Sbjct 2490 AGT 2488 Score = 134 bits (148), Expect = 2e-26 Identities = 194/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||| | | ||| || ||||| |||| ||||||||||| || || | ||||| ||||| Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || ||||| || | ||||| || | || |||||| | || || || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 | |||||||||||||| || ||||| || ||||| || ||||| || || ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 |||| |||| || || ||| |||||| | | || || || | ||| || Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 ||| || |||||||| |||||||||||||||||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629664294523440