Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 652 0.0
seq4404 161 1e-34
>seq1169
Length=8375
Score = 652 bits (722), Expect = 0.0
Identities = 1276/1874 (68%), Gaps = 18/1874 (1%)
Strand=Plus/Plus
Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096
||||| | || ||||| || | | | ||| || || || |||| ||| ||||||||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156
||||| ||||| ||||| ||||| || || || | ||| |||| | ||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216
|| || | ||| ||||| | || || ||||| || ||||| ||||| || |||||||||
Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001
Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62275
|||||||| | | ||| | ||| ||||| | ||||||||| || || || | |||
Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060
Query 62276 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGAT 62332
|| |||| |||| ||| ||||| || |||| | | || || |||| || ||
Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120
Query 62333 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTG 62392
||||||| ||| || | || |||||| | | | | || ||||||| |||||
Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180
Query 62393 GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62452
|| |||||||| || || || | ||||| ||||| || || ||||| | || ||
Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240
Query 62453 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62512
||||||||||| |||||||| || || || || ||||| ||||| || | | |||
Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300
Query 62513 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG 62572
||| | || || || || ||| |||| |||| ||||| ||| | || || ||
Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360
Query 62573 TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGA--TCCTACATAT 62630
| ||||||||| || || || || || | ||| ||||
Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418
Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690
|| ||||| || || | ||| ||||| |||| |||||| || ||||| | || ||||||
Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478
Query 62691 ATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTT 62750
|| |||||||| || | | ||||| | ||||| ||| ||| | ||||||
Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538
Query 62751 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62810
| | ||| | || || || || || ||||| ||||| || ||||| | |||||||
Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598
Query 62811 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62870
||||| || ||| ||| | | |||||||||||| || || || |||||||| ||||||
Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658
Query 62871 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT--- 62927
| | || ||| || ||||| | || |||||| || ||
Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718
Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987
|||||||| || || |||| ||||||| ||| || || || | |||| | | | |
Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778
Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047
|||| || || || ||||| | |||||| || || || || || | ||||||||| ||
Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838
Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107
|| ||| | ||||| | ||| ||| | | || ||||||| |||||||| | |||| |
Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898
Query 63108 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCT 63166
|| || || | ||| | | | || || ||| | | ||| |||| ||
Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957
Query 63167 TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACA 63226
||| ||| ||| || ||| |||||||| |||||||||| | | | ||| ||
Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017
Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286
|| || |||||||| | |||||||||| || |||| |||||||||||||| || ||
Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077
Query 63287 AGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTT 63346
|||||||||||||| ||||| ||| | | ||| ||||| || ||||| ||||| ||
Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137
Query 63347 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63406
||| ||||| | |||| | | ||| || | |||||| || || || || || || | |
Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197
Query 63407 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63466
|||||||| || ||||| ||||||| |||| ||| |||||| ||||||| |
Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257
Query 63467 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACG 63526
|||||| | || || || ||| ||||||| || || || || | || | |||||
Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317
Query 63527 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586
||| | || || ||||||||| || || ||| || || | || ||| |||
Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377
Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAG 63645
|| | | | | ||||||||||| ||| | | || |||||| |||||||| ||
Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436
Query 63646 ACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705
| | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || |
Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496
Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCT 63764
||| ||||||||||| || || || || |||| || |||||| || | || || ||
Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555
Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824
| || ||||||||||||||||| |||||||| ||| | || || ||||||||| ||
Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615
Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884
|| || ||| ||||||||||||||| ||||||||||| || ||| || || ||||||
Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675
Query 63885 ATAATAACCGAATT 63898
||||| | |||||
Sbjct 2676 ATAATTGCGGAATT 2689
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 64016 tttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATC 64075
||| |||||||| |||||||||||||||| || ||||| ||||||| |||||| |||||
Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674
Query 64076 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64129
| || | |||||| || | ||||| ||||| ||||| | | |||| || ||
Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728
>seq4404
Length=3800
Score = 161 bits (178), Expect = 1e-34
Identities = 403/603 (67%), Gaps = 12/603 (2%)
Strand=Plus/Minus
Query 33235 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 33291
||||||||||| |||| |||| |||| |||||| | |||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 33292 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33351
||| ||||| || || ||| |||||||| || || || || |||| || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 33352 CCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCA 33411
||||||| || ||||| | ||||| ||||| | || | |||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 33412 ATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 33471
| ||| ||||| || || |||||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 33472 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA- 33530
|||| || | || | || | ||||| || || || || || | | || ||
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 33531 -AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCA-AACATGCGA 33588
||| ||| | ||| | || | || | ||||| | ||||| | |||| || |
Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731
Query 33589 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCA 33648
| || ||||| | ||| || || | ||||||||| || || || || | || ||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 33649 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTT 33708
| |||||||| || || |||||||| ||||| || || || |||||| || || |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 33709 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATG-TATCCACT 33765
| || |||||||||||||||| |||||| || || || | | || ||| |||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551
Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825
| |||||||| ||||| ||| ||| ||||| || || || ||||| || ||||
Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491
Query 33826 AGT 33828
|||
Sbjct 2490 AGT 2488
Score = 134 bits (148), Expect = 2e-26
Identities = 194/274 (71%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||| | | ||| || ||||| |||| ||||||||||| || || | ||||| |||||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961
|| || || || ||||| || | ||||| || | || |||||| | || || ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021
| |||||||||||||| || ||||| || ||||| || ||||| || || |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081
|||| |||| || || ||| |||||| | | || || || | ||| ||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
||| || |||||||| ||||||||||||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629664294523440
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