Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1169 639 1e-178 seq4404 150 2e-31 >seq1169 Length=8375 Score = 639 bits (708), Expect = 1e-178 Identities = 1273/1862 (68%), Gaps = 30/1862 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||||| ||||| ||||| | | |||||||||||||||| Sbjct 825 TCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCAGTT 884 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || || || | ||||| ||||| || || |||| ||| | || | || | Sbjct 885 TTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGTTCG 944 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | ||| || ||||| || || || || ||||| || || |||||| Sbjct 945 GCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCCATT 1004 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | || | ||||| ||| |||||||| || |||||||||| | | | | || | Sbjct 1005 TTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACATCTTTA 1064 Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 || | || | |||||||||||||||| | | |||| || |||| || || ||| Sbjct 1065 GGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCATATCA 1124 Query 37087 TTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 | || ||||| || | | | | ||| || | |||| | | || ||||| ||||| Sbjct 1125 TCATCCCACAAATC-CAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTGAAA 1183 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 ||||||||||| || ||||| || |||||||| ||| || ||||||| || ||||| Sbjct 1184 CTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTCATT 1243 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 ||| | | ||||||| |||||| || |||||||||||||||| || ||| |||||| Sbjct 1244 ATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATTTCT 1303 Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT 37325 | ||||| | | ||| | |||| || | ||||||||| |||| ||||| || Sbjct 1304 TACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGGTTT 1363 Query 37326 CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTC 37385 ||| |||||| ||||||||||| || ||||| || || | | ||| ||||| Sbjct 1364 TTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTCATACGTCTC 1423 Query 37386 ATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGT 37445 ||| || || || ||| ||| ||||| ||||| | ||||| | |||||||| || Sbjct 1424 ATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATATATCGT 1483 Query 37446 TTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAA 37505 ||| ||||||||| |||||| | ||||||||||| || | | ||| | || ||| Sbjct 1484 TTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGCATTAA 1543 Query 37506 TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 || | ||||||| || |||||||| || || || || || | |||| || ||||| Sbjct 1544 AATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAGTTAGA 1603 Query 37566 -TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624 | | || | ||| || |||||||||||||| || |||||||||||||||||| Sbjct 1604 CTTTCGA-GCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTTCGTG 1662 Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACGTTATTATTA-ACAA 37681 || ||||||||| | | | ||||| ||||| |||| | || | | |||| Sbjct 1663 TTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGACACAA 1722 Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATT 37741 | || | || | ||| ||| | | ||| ||||| |||| ||||||| | | ||| Sbjct 1723 ACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAATATT 1782 Query 37742 GTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATT 37801 || ||| ||||| || | |||||| || |||| || || | ||| ||| ||| || Sbjct 1783 CTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTGCTTT 1842 Query 37802 TTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGA 37861 || ||||||| ||||||||| | | ||||| || || || ||||| |||||| || | Sbjct 1843 TTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCTTCAA 1902 Query 37862 TAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtt-----tttttCTTTGT 37916 | ||||| ||| | | | ||||||| || | || || ||||| Sbjct 1903 TTATAGAAAACCAAAGAGATTGTGCTTTA---ATTTTTCTACTTGCGCGACCTTCTT--G 1957 Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976 ||| |||| | |||||| || | ||| || | ||||| ||||| | || || || Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017 Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036 || |||||||| || ||||| ||| ||||| ||||| |||| |||||| | || Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077 Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096 || | ||| | || ||||||||| | ||| | |||||| || || ||| || Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137 Query 38097 TCTTA-AGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155 | ||| | | || || ||||| || || || ||||| || |||| |||||| | | || Sbjct 2138 TTTTAGATCCAAG-AACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATG 2196 Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215 |||| || || ||| ||||||| |||| | ||||| | |||||| | | ||| | Sbjct 2197 CTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAA 2256 Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275 ||| || || | ||||| ||| | || || | || || || ||||||||||||| | Sbjct 2257 GCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCAC 2316 Query 38276 GTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 | || | | | | || ||||||||||| ||| ||||||||| | || |||||| Sbjct 2317 GAAT-GCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGT 2375 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 | || | | ||| || ||||||||| || | |||| || | |||||| | Sbjct 2376 TCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAAACATGAA 2435 Query 38395 GACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 || | ||| || | || | ||| | || ||| || ||||| |||||||| |||| | Sbjct 2436 GATAGTTGCGGACGATTG-GTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTA 2494 Query 38454 TTTTTCCGACAAATA-ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 |||||| || || |||||| ||||||||| | |||| ||||| | ||||| |||| Sbjct 2495 ACGTTCCGA-AAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCGTGTATAC 2553 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT-TTTATTATTCTGTTTA 38571 | | | || | ||||| ||| ||||| ||||| || || ||| || | |||| Sbjct 2554 CAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTA 2613 Query 38572 AGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCG 38631 | || ||||||| ||| || ||||| | ||||||||| |||| | |||| | ||| Sbjct 2614 A-TAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCG 2672 Query 38632 TA 38633 || Sbjct 2673 TA 2674 >seq4404 Length=3800 Score = 150 bits (166), Expect = 2e-31 Identities = 307/448 (69%), Gaps = 10/448 (2%) Strand=Plus/Minus Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389 || ||||| ||||||||| | ||| | |||||||| || ||||| || || || Sbjct 3037 ACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGC 2978 Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAA-CCTAA 11448 || || | ||||| || | || ||||| | | ||| ||| |||| | || || | Sbjct 2977 GAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGA-TTTTGCCCACGCCGAG 2919 Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508 || || || | ||| ||||| || || ||||| | ||||| | ||||||||| Sbjct 2918 TTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCAT 2859 Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568 || || || | ||||| | ||| | ||||| || |||| ||||| || || || || Sbjct 2858 GCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTC 2799 Query 11569 ---AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 ||||||| || | | ||| || || | ||| | || | ||||| | ||||| Sbjct 2798 CGAAATGATT-TCAA--TAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACAT 2742 Query 11626 TA-AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684 | |||| ||||| ||||| ||||||||||| || | |||| |||||| || |||| Sbjct 2741 AAGAACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATG 2683 Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744 |||| || ||||| | || ||||| || | |||||| || | ||||| ||| || Sbjct 2682 TTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAA 2623 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGC 11772 ||||||| ||||| || || ||||| || Sbjct 2622 AGAATATGCCCTCGACCGCAGCAAAGGC 2595 Score = 102 bits (112), Expect = 8e-17 Identities = 186/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||||| ||| || || ||||| | ||||||||||| || || | ||||||||| || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 ||||| || |||||||| || |||||||| | ||| || || || || | | Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAG-TCACTTGAACTTCTTGGCTGAAACGCT 2288 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | | ||||| ||||| ||||| ||||| || ||||| || || | | || || Sbjct 2287 CGACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATA 2228 Query 12069 TAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTA 12128 | || | |||| | ||| | ||| ||||||| || || || || | ||||| Sbjct 2227 TGAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTA 2168 Query 12129 CTTCTTCAACGGTCCAAAAACTTGCCACTG 12158 |||| ||||| ||||| || |||| ||| Sbjct 2167 CTTCCTCAACTGTCCAGAATGATGCCTCTG 2138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468410755207120