Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 639 1e-178
seq4404 150 2e-31
>seq1169
Length=8375
Score = 639 bits (708), Expect = 1e-178
Identities = 1273/1862 (68%), Gaps = 30/1862 (2%)
Strand=Plus/Plus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
|| || || |||| ||||| ||||| ||||| ||||| | | ||||||||||||||||
Sbjct 825 TCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCAGTT 884
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909
|| || || | ||||| ||||| || || |||| ||| | || | || |
Sbjct 885 TTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGTTCG 944
Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969
| | || ||| | | ||| || ||||| || || || || ||||| || || ||||||
Sbjct 945 GCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCCATT 1004
Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029
| || | ||||| ||| |||||||| || |||||||||| | | | | || |
Sbjct 1005 TTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACATCTTTA 1064
Query 37030 GGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086
|| | || | |||||||||||||||| | | |||| || |||| || || |||
Sbjct 1065 GGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCATATCA 1124
Query 37087 TTATTCCACATATTTCTACTTA-TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145
| || ||||| || | | | | ||| || | |||| | | || ||||| |||||
Sbjct 1125 TCATCCCACAAATC-CAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTGAAA 1183
Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205
||||||||||| || ||||| || |||||||| ||| || ||||||| || |||||
Sbjct 1184 CTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTCATT 1243
Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265
||| | | ||||||| |||||| || |||||||||||||||| || ||| ||||||
Sbjct 1244 ATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATTTCT 1303
Query 37266 CAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT 37325
| ||||| | | ||| | |||| || | ||||||||| |||| ||||| ||
Sbjct 1304 TACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGGTTT 1363
Query 37326 CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTC 37385
||| |||||| ||||||||||| || ||||| || || | | ||| |||||
Sbjct 1364 TTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTCATACGTCTC 1423
Query 37386 ATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGT 37445
||| || || || ||| ||| ||||| ||||| | ||||| | |||||||| ||
Sbjct 1424 ATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATATATCGT 1483
Query 37446 TTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAA 37505
||| ||||||||| |||||| | ||||||||||| || | | ||| | || |||
Sbjct 1484 TTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGCATTAA 1543
Query 37506 TATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565
|| | ||||||| || |||||||| || || || || || | |||| || |||||
Sbjct 1544 AATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAGTTAGA 1603
Query 37566 -TCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAA 37624
| | || | ||| || |||||||||||||| || ||||||||||||||||||
Sbjct 1604 CTTTCGA-GCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTTCGTG 1662
Query 37625 CTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAATACGTTATTATTA-ACAA 37681
|| ||||||||| | | | ||||| ||||| |||| | || | | ||||
Sbjct 1663 TTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGACACAA 1722
Query 37682 ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATT 37741
| || | || | ||| ||| | | ||| ||||| |||| ||||||| | | |||
Sbjct 1723 ACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAATATT 1782
Query 37742 GTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATT 37801
|| ||| ||||| || | |||||| || |||| || || | ||| ||| ||| ||
Sbjct 1783 CTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTGCTTT 1842
Query 37802 TTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGA 37861
|| ||||||| ||||||||| | | ||||| || || || ||||| |||||| || |
Sbjct 1843 TTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCTTCAA 1902
Query 37862 TAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtt-----tttttCTTTGT 37916
| ||||| ||| | | | ||||||| || | || || |||||
Sbjct 1903 TTATAGAAAACCAAAGAGATTGTGCTTTA---ATTTTTCTACTTGCGCGACCTTCTT--G 1957
Query 37917 TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACA 37976
||| |||| | |||||| || | ||| || | ||||| ||||| | || || ||
Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017
Query 37977 TTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATC 38036
|| |||||||| || ||||| ||| ||||| ||||| |||| |||||| | ||
Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077
Query 38037 AGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTT 38096
|| | ||| | || ||||||||| | ||| | |||||| || || ||| ||
Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137
Query 38097 TCTTA-AGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTG 38155
| ||| | | || || ||||| || || || ||||| || |||| |||||| | | ||
Sbjct 2138 TTTTAGATCCAAG-AACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATG 2196
Query 38156 CTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTA 38215
|||| || || ||| ||||||| |||| | ||||| | |||||| | | ||| |
Sbjct 2197 CTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAA 2256
Query 38216 ACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTC 38275
||| || || | ||||| ||| | || || | || || || ||||||||||||| |
Sbjct 2257 GCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCAC 2316
Query 38276 GTATATTACTTATCGACAAT-CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334
| || | | | | || ||||||||||| ||| ||||||||| | || ||||||
Sbjct 2317 GAAT-GCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGT 2375
Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
| || | | ||| || ||||||||| || | |||| || | |||||| |
Sbjct 2376 TCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAAACATGAA 2435
Query 38395 GACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453
|| | ||| || | || | ||| | || ||| || ||||| |||||||| |||| |
Sbjct 2436 GATAGTTGCGGACGATTG-GTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTA 2494
Query 38454 TTTTTCCGACAAATA-ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512
|||||| || || |||||| ||||||||| | |||| ||||| | ||||| ||||
Sbjct 2495 ACGTTCCGA-AAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCGTGTATAC 2553
Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTAT-TTTATTATTCTGTTTA 38571
| | | || | ||||| ||| ||||| ||||| || || ||| || | ||||
Sbjct 2554 CAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTA 2613
Query 38572 AGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCG 38631
| || ||||||| ||| || ||||| | ||||||||| |||| | |||| | |||
Sbjct 2614 A-TAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCG 2672
Query 38632 TA 38633
||
Sbjct 2673 TA 2674
>seq4404
Length=3800
Score = 150 bits (166), Expect = 2e-31
Identities = 307/448 (69%), Gaps = 10/448 (2%)
Strand=Plus/Minus
Query 11330 ACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGT 11389
|| ||||| ||||||||| | ||| | |||||||| || ||||| || || ||
Sbjct 3037 ACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGC 2978
Query 11390 GATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAA-CCTAA 11448
|| || | ||||| || | || ||||| | | ||| ||| |||| | || || |
Sbjct 2977 GAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGA-TTTTGCCCACGCCGAG 2919
Query 11449 CTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCAT 11508
|| || || | ||| ||||| || || ||||| | ||||| | |||||||||
Sbjct 2918 TTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCAT 2859
Query 11509 ACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC 11568
|| || || | ||||| | ||| | ||||| || |||| ||||| || || || ||
Sbjct 2858 GCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTC 2799
Query 11569 ---AATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625
||||||| || | | ||| || || | ||| | || | ||||| | |||||
Sbjct 2798 CGAAATGATT-TCAA--TAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACAT 2742
Query 11626 TA-AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATG 11684
| |||| ||||| ||||| ||||||||||| || | |||| |||||| || ||||
Sbjct 2741 AAGAACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATG 2683
Query 11685 TTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAA 11744
|||| || ||||| | || ||||| || | |||||| || | ||||| ||| ||
Sbjct 2682 TTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAA 2623
Query 11745 AGAATATTCCCTCCACAGCTGCAAATGC 11772
||||||| ||||| || || ||||| ||
Sbjct 2622 AGAATATGCCCTCGACCGCAGCAAAGGC 2595
Score = 102 bits (112), Expect = 8e-17
Identities = 186/270 (69%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||||| ||| || || ||||| | ||||||||||| || || | ||||||||| ||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008
||||| || |||||||| || |||||||| | ||| || || || || | |
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAG-TCACTTGAACTTCTTGGCTGAAACGCT 2288
Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068
| | ||||| ||||| ||||| ||||| || ||||| || || | | || ||
Sbjct 2287 CGACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATA 2228
Query 12069 TAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTA 12128
| || | |||| | ||| | ||| ||||||| || || || || | |||||
Sbjct 2227 TGAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTA 2168
Query 12129 CTTCTTCAACGGTCCAAAAACTTGCCACTG 12158
|||| ||||| ||||| || |||| |||
Sbjct 2167 CTTCCTCAACTGTCCAGAATGATGCCTCTG 2138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468410755207120
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