Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 670 0.0
seq4404 183 4e-41
>seq1169
Length=8375
Score = 670 bits (742), Expect = 0.0
Identities = 1274/1865 (68%), Gaps = 18/1865 (1%)
Strand=Plus/Plus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
||||| | || ||||| || | | | ||| || || || |||| ||| ||||||||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||| ||||| ||||| ||||| || || || | ||| |||| | ||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| || | ||| ||||| | || || ||||| || ||||| ||||| || |||||||||
Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 65068
|||||||| | | ||| | ||| ||||| | ||||||||| || || || | |||
Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060
Query 65069 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125
|| |||| |||| ||| ||||| || |||| | || || || |||| || ||
Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120
Query 65126 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 65185
||||||| ||| || | || |||||| | | | | || | ||||| |||||
Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180
Query 65186 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 65245
||| |||||||| || || || | ||||| ||||| || || ||||| | || ||
Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240
Query 65246 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 65305
||||||||||| |||||||| || || || || ||||| ||||| || | | |||
Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300
Query 65306 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 65365
||| | || || || || ||| |||| ||| ||||| ||| | || || ||
Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360
Query 65366 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA--TCCTACATAT 65423
| |||||| || || || || || | ||| ||||
Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418
Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483
|| || || || || | ||| ||||| ||||||||||| || ||||| | || ||||||
Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478
Query 65484 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 65543
|| ||||| || || | | ||||| | ||||| ||| ||| | ||||||
Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538
Query 65544 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 65603
| | ||| | || || || || || ||||| ||||| || ||||| | |||||||
Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598
Query 65604 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 65663
||||| || ||| ||| | | |||||||||||| || || || |||||||| ||||||
Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658
Query 65664 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTATT--- 65720
| | || ||| || ||||| | || |||||| || | ||
Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718
Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780
|||||||| || || |||| ||||||| ||| || || || | |||| | | | |
Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778
Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840
|||| || || || ||||| | |||||| || || ||||| || | ||||||||| ||
Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838
Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900
|| ||| | ||||| | ||| ||| | | || ||||||| |||||||| | |||| |
Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898
Query 65901 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCTTTTCTCT 65959
|| || || | ||| | | | || || ||| | | ||| | || ||
Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957
Query 65960 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 66019
||| ||| | ||| || ||| |||||||| |||||||||| | | ||||| ||
Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017
Query 66020 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 66079
|| || |||||||| | |||||||||| || |||| |||||||||||||| || ||
Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077
Query 66080 AGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 66139
|||||||||||||| ||||||||| | | ||| ||||| || ||||| ||||| ||
Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137
Query 66140 TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAAC 66199
||| ||||| | |||| | | ||| || |||||| || || || || || || | |
Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197
Query 66200 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 66259
|||||||| || ||||| ||||||| |||| ||| |||||| ||||||| |
Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257
Query 66260 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACG 66319
|||||| | || ||||| ||||||||||| || || || || | | || | |||||
Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317
Query 66320 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 66379
||| | || || ||||||||| || || ||| || || | || ||| |||
Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377
Query 66380 TAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAG 66438
|| | | | | ||||| |||||| ||| | | || |||||| |||||||| ||
Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436
Query 66439 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498
| | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || |
Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496
Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCT 66557
||| ||||||||||| || || || || |||| || |||||| || | || || ||
Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555
Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617
| || ||||||||||||||||| |||||||| ||| ||||||| ||||||||| ||
Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615
Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 66677
|| || ||| ||||||||||||||| ||||||||||| || ||| || || ||||||
Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675
Query 66678 ATAAT 66682
|||||
Sbjct 2676 ATAAT 2680
Score = 107 bits (118), Expect = 3e-18
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 66809 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATC 66868
||| |||||||||||||||||||||||||| || ||||| ||||||| |||||| |||||
Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674
Query 66869 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922
| || | |||||| || | ||||| ||||| ||||| | | |||| || ||
Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728
>seq4404
Length=3800
Score = 183 bits (202), Expect = 4e-41
Identities = 407/603 (67%), Gaps = 12/603 (2%)
Strand=Plus/Minus
Query 35811 TTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 35867
||||||| ||| |||| | || |||| |||||| | |||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 35868 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 35927
||| ||||| || || ||| |||||||| || || || || || | || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 35928 CCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 35987
||||||| ||||||||| | || || ||||| | || | |||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 35988 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 36047
| ||| |||||||| || |||||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 36048 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 36107
|||| || | || | || | ||||| || || || ||| || || | || ||
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 36108 --ATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA-AACATGCGA 36164
||| ||| | ||| | || | | || ||||| | ||||| | |||| || |
Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731
Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224
| || ||||||| ||| || || | ||||||||| ||||| || || | || ||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284
| |||||||| || || |||||||| ||||||||||| ||| |||||| || || |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACT 36341
| || || ||||||||||||| |||||| || || || | | ||| |||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551
Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401
| |||||||| ||||| ||| ||| ||||| ||||| || ||||| || ||||
Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491
Query 36402 AGT 36404
|||
Sbjct 2490 AGT 2488
Score = 134 bits (148), Expect = 2e-26
Identities = 194/274 (71%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||| | | ||| || || || |||| ||||||||||| || || | ||||| |||||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||| || || ||||| || | ||||| || | || |||||| | || || ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597
| |||||||||||||| || || || || ||||| || ||||| || || |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 36598 AAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 36657
|||| ||||| || || ||| |||||| | | || || || | ||| ||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 36658 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691
||| || |||||||| ||||||||||||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658012592513320
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