Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6120 127 2e-24 >seq6120 Length=7451 Score = 127 bits (140), Expect = 2e-24 Identities = 197/279 (71%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 20928 GGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGG 20987 || || | |||||| |||| || || || || || | ||||| || ||||||||||| Sbjct 5025 GGTTCTATGTGGTTACTGTAGACATGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGT 4966 Query 20988 GTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAAC 21047 | |||||||| || ||||| |||| ||||| || || || || |||||||||||| Sbjct 4965 TTAAGGCCCGTCACATGAGCTATCATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAG 4906 Query 21048 GGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGA 21107 || || || || ||||| || ||| | || ||||||||||| |||| ||| || || Sbjct 4905 GGCACACCCAGACCCATATCTGCGCTGCGTTGATACAGCTGGCAAGACAACTCACCGCGT 4846 Query 21108 GCC------ACGTAAAACTGACACAAAAC-GTGACAAGGAGGGAGAGCCATCCGCGCGAG 21160 | | ||||| || ||| ||| || || || || || | |||||| ||| | Sbjct 4845 GTCGTTGATACGTAGAATTGA-GCAAGACAATGGCATGGTGGCAATGCCATCTGCGGTAT 4787 Query 21161 GTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 ||| |||||||| ||| |||||| || || ||||| Sbjct 4786 ATCCAAAGGGTTCCAAGCGGACATAATAATCCGACGATC 4748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427674477125040