Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17788 105 7e-18 seq489 102 8e-17 >seq17788 Length=7208 Score = 105 bits (116), Expect = 7e-18 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||||||| || || | || || ||||| || || |||||||| | ||| |||| Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGT--TCGAC 2355 Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667 ||||| | |||||| |||||| |||| |||||||| ||||| ||||| || ||||||| Sbjct 2354 CATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTT 2295 Query 139668 TGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 |||| ||| | || | ||| | | ||| | ||||| | || || ||||||| || Sbjct 2294 TGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTG 2236 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || || | ||||| || || || ||||| Sbjct 2235 ATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCAT 2198 >seq489 Length=77466 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||| || ||| | ||||| || | ||||| || || || || Sbjct 4424 GTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCA-TCTTCCAGTTGCTTGCC 4482 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||||||| || || || || || ||||| |||||||| ||| || || Sbjct 4483 GGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTT 4542 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | ||||| ||||| | ||| | ||||| ||||| | || Sbjct 4543 GACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGT 4602 Query 139747 TTTTACGAATATTTGCAT 139764 ||| |||||||| ||||| Sbjct 4603 TTTGACGAATATCTGCAT 4620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495943251821600