Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 105 7e-18
seq489 102 8e-17
>seq17788
Length=7208
Score = 105 bits (116), Expect = 7e-18
Identities = 157/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||||||| || || | || || ||||| || || |||||||| | ||| ||||
Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGT--TCGAC 2355
Query 139610 --TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTT 139667
||||| | |||||| |||||| |||| |||||||| ||||| ||||| || |||||||
Sbjct 2354 CATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTT 2295
Query 139668 TGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
|||| ||| | || | ||| | | ||| | ||||| | || || ||||||| ||
Sbjct 2294 TGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTG 2236
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| ||||| || || | ||||| || || || |||||
Sbjct 2235 ATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCAT 2198
>seq489
Length=77466
Score = 102 bits (112), Expect = 8e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| ||||||||||| || ||| | ||||| || | ||||| || || || ||
Sbjct 4424 GTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCA-TCTTCCAGTTGCTTGCC 4482
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
||| |||||||||| || || || || || ||||| |||||||| ||| || ||
Sbjct 4483 GGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTAGCCTT 4542
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||| | ||||| ||||| | ||| | ||||| ||||| | ||
Sbjct 4543 GACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTGAGAGT 4602
Query 139747 TTTTACGAATATTTGCAT 139764
||| |||||||| |||||
Sbjct 4603 TTTGACGAATATCTGCAT 4620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495943251821600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |