Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1169 675 0.0 seq4404 167 3e-36 >seq1169 Length=8375 Score = 675 bits (748), Expect = 0.0 Identities = 1278/1865 (69%), Gaps = 18/1865 (1%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||| | || ||||| || | | | ||| || || || |||| ||| |||||||| Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| ||||| || || || || || | ||| |||| | || Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || || | ||| ||||| | || || ||||| || ||||| ||||| || ||||||||| Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947 |||||||| | | ||| | ||| ||||| | ||||||||| || || || | ||| Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060 Query 78948 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004 || |||| |||| ||| ||||| || |||| | || || || |||| || || Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120 Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064 || |||| ||| || | || |||||| | | | | || | ||||| ||||| Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180 Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||| |||||||| || || || | ||||| ||||| || || ||||| | ||||| Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||||||||||| |||||||| || || || || ||||| ||||| || | | ||| Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300 Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG 79244 ||| | || || | || ||| |||| || ||||||||| | || | || Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360 Query 79245 GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTGTGTAT 79302 ||| | ||||||||||| || || || || || | ||| || Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418 Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 || ||||| || || | |||||| || | ||||||||| || ||||| | | |||||| Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 || ||||| ||||| | | ||| | | |||||| ||| ||| | |||||| Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482 | | ||| | || || || || || ||||| ||||| || ||||| | ||||||| Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598 Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542 ||||| || ||| ||| | | |||||||||||| || || || |||||||| ||||| Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658 Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT--- 79599 | || || ||| || ||||||| || |||||| || | || Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718 Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 |||||||| || || || | ||||||| ||| || || || | |||| | | | | Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| || ||||| ||||| | ||||| || |||||||| || | ||||||||| || Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||| | ||||| | ||| ||| | | || | ||||| |||||||| | |||| | Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898 Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTCT 79838 || || || | ||| | | | || || ||| | ||||| | || || Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957 Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 ||| |||| | |||||| ||| |||||||| ||||||||||| | | ||||| || Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 || | ||||||||| | |||||||||| ||| |||| ||||||||||||||| || || Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077 Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 |||||||||||||| ||||| ||| | | ||| || || || ||||| ||||| || Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 ||| ||||| | |||| | | ||| || | |||||| || || || || || || | | Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 ||| || | || ||||| ||||||| |||| ||| |||||| ||||||| | Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 |||||| | || ||||| ||||||||||| || || || || | | || | ||||| Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258 ||| | || || ||||||||| || || ||| || || | || ||| ||| Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377 Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAG 80317 || | | | | ||||| ||||| ||| | | || |||||| |||||||| || Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436 Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377 | | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || | Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496 Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCT 80436 ||| || |||||||| || || || || |||| || |||||| || | || || || Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 | ||| ||||||||||||||||| |||||||| ||| ||||||| |||||||| || Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 || || ||| ||||||||||||||| ||||||||||| || ||| || || |||||| Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675 Query 80557 ATAAT 80561 ||||| Sbjct 2676 ATAAT 2680 Score = 111 bits (122), Expect = 2e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 ||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 80801 || || | |||||| || | ||||| ||||| ||||| | | |||| || || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728 >seq4404 Length=3800 Score = 167 bits (184), Expect = 3e-36 Identities = 402/601 (67%), Gaps = 8/601 (1%) Strand=Plus/Minus Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTG---AGACATAACTCCCATTT 49669 ||||||||||| |||| | || |||| || ||| | |||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729 ||| ||||| || || ||| |||||||| || || || || |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789 ||||||| || ||||| | || || ||||| | || | |||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849 | ||| |||||||| || |||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909 |||| || | || | || | ||||| || || || || || || | || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCA-AACATGCGAAA 49968 ||| |||| | || | |||| ||||| | ||||| | |||| || || Sbjct 2787 CAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAAG 2729 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || ||||| | ||| || || | ||||| ||| ||||| || || | || ||||| Sbjct 2728 TCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATA 2669 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088 |||||||| || || |||||||| ||||||||||| ||| |||||| || || || Sbjct 2668 AGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCG 2609 Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC-ATG-TATCCACTTT 50145 || || |||||||||| || |||||| || || | || | | || ||| ||||| Sbjct 2608 ACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGAG 2549 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 | |||||||| ||||| ||| ||| ||||| || || || ||||| || |||||| Sbjct 2548 AGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGATAG 2489 Query 50206 T 50206 | Sbjct 2488 T 2488 Score = 143 bits (158), Expect = 4e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||| | | ||| || ||||| |||| ||||||||||| || || | ||||| ||||| Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339 || || || || ||||| || | ||||| || | || |||||| | || || || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399 | |||||||||||||| || || || || ||||| || ||||| || || ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459 ||||| ||||| || || ||| |||||| | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 ||| || |||||||| |||||||||||||||||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718093964395720