Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 675 0.0
seq4404 167 3e-36
>seq1169
Length=8375
Score = 675 bits (748), Expect = 0.0
Identities = 1278/1865 (69%), Gaps = 18/1865 (1%)
Strand=Plus/Plus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
||||| | || ||||| || | | | ||| || || || |||| ||| ||||||||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
||||| ||||| ||||| || || || || || | ||| |||| | ||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| || | ||| ||||| | || || ||||| || ||||| ||||| || |||||||||
Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 78947
|||||||| | | ||| | ||| ||||| | ||||||||| || || || | |||
Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060
Query 78948 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 79004
|| |||| |||| ||| ||||| || |||| | || || || |||| || ||
Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120
Query 79005 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 79064
|| |||| ||| || | || |||||| | | | | || | ||||| |||||
Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180
Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124
||| |||||||| || || || | ||||| ||||| || || ||||| | |||||
Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240
Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184
||||||||||| |||||||| || || || || ||||| ||||| || | | |||
Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300
Query 79185 TCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGG 79244
||| | || || | || ||| |||| || ||||||||| | || | ||
Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360
Query 79245 GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGA--TCCTGTGTAT 79302
||| | ||||||||||| || || || || || | ||| ||
Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418
Query 79303 GTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362
|| ||||| || || | |||||| || | ||||||||| || ||||| | | ||||||
Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478
Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422
|| ||||| ||||| | | ||| | | |||||| ||| ||| | ||||||
Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538
Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 79482
| | ||| | || || || || || ||||| ||||| || ||||| | |||||||
Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598
Query 79483 TTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTC 79542
||||| || ||| ||| | | |||||||||||| || || || |||||||| |||||
Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658
Query 79543 CTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT--- 79599
| || || ||| || ||||||| || |||||| || | ||
Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718
Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659
|||||||| || || || | ||||||| ||| || || || | |||| | | | |
Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778
Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719
|||| || ||||| ||||| | ||||| || |||||||| || | ||||||||| ||
Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838
Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779
|| ||| | ||||| | ||| ||| | | || | ||||| |||||||| | |||| |
Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898
Query 79780 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ACTTGTATCTCTTTTCTCT 79838
|| || || | ||| | | | || || ||| | ||||| | || ||
Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957
Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898
||| |||| | |||||| ||| |||||||| ||||||||||| | | ||||| ||
Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017
Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958
|| | ||||||||| | |||||||||| ||| |||| ||||||||||||||| || ||
Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077
Query 79959 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018
|||||||||||||| ||||| ||| | | ||| || || || ||||| ||||| ||
Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137
Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078
||| ||||| | |||| | | ||| || | |||||| || || || || || || | |
Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197
Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138
||| || | || ||||| ||||||| |||| ||| |||||| ||||||| |
Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257
Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198
|||||| | || ||||| ||||||||||| || || || || | | || | |||||
Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317
Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 80258
||| | || || ||||||||| || || ||| || || | || ||| |||
Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377
Query 80259 TAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAG 80317
|| | | | | ||||| ||||| ||| | | || |||||| |||||||| ||
Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436
Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377
| | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || |
Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496
Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCT 80436
||| || |||||||| || || || || |||| || |||||| || | || || ||
Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555
Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496
| ||| ||||||||||||||||| |||||||| ||| ||||||| |||||||| ||
Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615
Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556
|| || ||| ||||||||||||||| ||||||||||| || ||| || || ||||||
Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675
Query 80557 ATAAT 80561
|||||
Sbjct 2676 ATAAT 2680
Score = 111 bits (122), Expect = 2e-19
Identities = 93/114 (82%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747
||| |||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||
Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674
Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 80801
|| || | |||||| || | ||||| ||||| ||||| | | |||| || ||
Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728
>seq4404
Length=3800
Score = 167 bits (184), Expect = 3e-36
Identities = 402/601 (67%), Gaps = 8/601 (1%)
Strand=Plus/Minus
Query 49613 TTTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTG---AGACATAACTCCCATTT 49669
||||||||||| |||| | || |||| || ||| | |||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 49670 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 49729
||| ||||| || || ||| |||||||| || || || || |||| || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 49730 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 49789
||||||| || ||||| | || || ||||| | || | |||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 49790 ATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 49849
| ||| |||||||| || |||||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 49850 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 49909
|||| || | || | || | ||||| || || || || || || | || ||
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 49910 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCA-AACATGCGAAA 49968
||| |||| | || | |||| ||||| | ||||| | |||| || ||
Sbjct 2787 CAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAAG 2729
Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028
|| ||||| | ||| || || | ||||| ||| ||||| || || | || |||||
Sbjct 2728 TCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATA 2669
Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCT 50088
|||||||| || || |||||||| ||||||||||| ||| |||||| || || ||
Sbjct 2668 AGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCG 2609
Query 50089 ACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC-GCTGTC-ATG-TATCCACTTT 50145
|| || |||||||||| || |||||| || || | || | | || ||| |||||
Sbjct 2608 ACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGAG 2549
Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205
| |||||||| ||||| ||| ||| ||||| || || || ||||| || ||||||
Sbjct 2548 AGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGATAG 2489
Query 50206 T 50206
|
Sbjct 2488 T 2488
Score = 143 bits (158), Expect = 4e-29
Identities = 196/274 (72%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279
|||| | | ||| || ||||| |||| ||||||||||| || || | ||||| |||||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 50339
|| || || || ||||| || | ||||| || | || |||||| | || || ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 50340 AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 50399
| |||||||||||||| || || || || ||||| || ||||| || || |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 50400 AAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 50459
||||| ||||| || || ||| |||||| | | || || || | ||||||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 50460 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493
||| || |||||||| ||||||||||||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718093964395720
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