Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 158 1e-33
>seq4404
Length=3800
Score = 158 bits (174), Expect = 1e-33
Identities = 336/498 (67%), Gaps = 8/498 (2%)
Strand=Plus/Minus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
||||| ||| |||| || | |||||| || || |||||| || || ||||| |
Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGCGT 3026
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||| | ||| |||| || || ||||| || || || ||||| || || ||||
Sbjct 3025 TGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTCC 2966
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703
|| || |||||||| ||| | | | ||| | || ||||| | |||||
Sbjct 2965 ATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAGG 2906
Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763
| |||||| | |||||||||||||| ||||| | | ||||||||| || || || ||
Sbjct 2905 CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTTA 2846
Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823
|| || | | || ||| || ||||| | ||||| || ||||| ||| |||
Sbjct 2845 ACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTC---CGAAATGATT 2789
Query 13824 GTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAA 13879
|||||| ||| || | ||| | | | ||| | || || | |||| |||||
Sbjct 2788 TCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAA 2730
Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939
||||| || | || ||||| | ||| | ||| || || |||||||| || |||||
Sbjct 2729 GTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCAT 2670
Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999
| || ||||| || | |||||| || | ||||| || ||||||||| |||||
Sbjct 2669 AAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTC 2610
Query 14000 AACTGCAGCAAACGCTAT 14017
|| |||||||| || ||
Sbjct 2609 GACCGCAGCAAAGGCAAT 2592
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221
|||||||||||| ||||| | |||||||| || || || || ||||| ||||| | ||
Sbjct 2379 GCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGC 2320
Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281
|| | | ||| ||||| | || | ||| ||||||||||||| || || |||||
Sbjct 2319 CTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATC 2260
Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341
||| ||||| || ||||| | || || || | |||| | || | || ||
Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200
Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
|||||| | || ||||| || ||||||||||| ||||||||||| ||
Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479611228208200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |