Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4404 158 1e-33 >seq4404 Length=3800 Score = 158 bits (174), Expect = 1e-33 Identities = 336/498 (67%), Gaps = 8/498 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 ||||| ||| |||| || | |||||| || || |||||| || || ||||| | Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGCGT 3026 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | ||| |||| || || ||||| || || || ||||| || || |||| Sbjct 3025 TGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTCC 2966 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || || |||||||| ||| | | | ||| | || ||||| | ||||| Sbjct 2965 ATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAGG 2906 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | |||||| | |||||||||||||| ||||| | | ||||||||| || || || || Sbjct 2905 CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTTA 2846 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || || | | || ||| || ||||| | ||||| || ||||| ||| ||| Sbjct 2845 ACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTC---CGAAATGATT 2789 Query 13824 GTAATAAT---CTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAA 13879 |||||| ||| || | ||| | | | ||| | || || | |||| ||||| Sbjct 2788 TCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAA 2730 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | || ||||| | ||| | ||| || || |||||||| || ||||| Sbjct 2729 GTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCAT 2670 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 | || ||||| || | |||||| || | ||||| || ||||||||| ||||| Sbjct 2669 AAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTC 2610 Query 14000 AACTGCAGCAAACGCTAT 14017 || |||||||| || || Sbjct 2609 GACCGCAGCAAAGGCAAT 2592 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14162 GCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGC 14221 |||||||||||| ||||| | |||||||| || || || || ||||| ||||| | || Sbjct 2379 GCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGC 2320 Query 14222 TTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATC 14281 || | | ||| ||||| | || | ||| ||||||||||||| || || ||||| Sbjct 2319 CTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATC 2260 Query 14282 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14341 ||| ||||| || ||||| | || || || | |||| | || | || || Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 |||||| | || ||||| || ||||||||||| ||||||||||| || Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479611228208200