Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 150 2e-31
>seq4404
Length=3800
Score = 150 bits (166), Expect = 2e-31
Identities = 392/594 (66%), Gaps = 8/594 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371
||||| ||| |||| || | |||||| || || |||||| || || ||||| |
Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGCGT 3026
Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431
|||||||| | ||| |||| || |||||||| || || || ||||| || || ||||
Sbjct 3025 TGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTCC 2966
Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491
|| || ||||||||| ||| | | | ||| | || ||||| | || ||
Sbjct 2965 ATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAGG 2906
Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551
| |||||| | |||||||||||||| ||||| | | ||||||||| || || || ||
Sbjct 2905 CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTTA 2846
Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611
|| || | | || || || ||||| | ||||| || ||||| ||| ||
Sbjct 2845 ACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTC---CGAAATGATT 2789
Query 13612 TTAATAAT---GTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAA 13667
| |||||| || || | ||| | | | ||| | || || | |||| |||||
Sbjct 2788 TCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAA 2730
Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727
||||| || | || ||||| | ||| | ||| || || |||||||| || |||||
Sbjct 2729 GTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCAT 2670
Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787
| || ||||| || | |||||| || | || || || ||||||||| |||||
Sbjct 2669 AAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTC 2610
Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847
|| |||||||| || || | || || || || ||| ||| ||| |||||
Sbjct 2609 GACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGA 2550
Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAA 13901
||||| |||| || ||||| | ||| || || |||||||||||
Sbjct 2549 GAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAA 2496
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 13950 GCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGC 14009
|||||||||||| ||||| | ||||| || || || || || ||||| || || | ||
Sbjct 2379 GCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGC 2320
Query 14010 TTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATC 14069
|| | | ||| || || | || | || |||| |||||||| ||||| |||||
Sbjct 2319 CTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATC 2260
Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT 14129
||| ||||| || ||||| | || || || | |||| | || | || ||
Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200
Query 14130 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180
|||||| | || ||||| || ||||||||||| ||||||||||| ||
Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478472305503720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |